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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTCTCATAAACACACAAAAACCACCACTGATAAAAAGAAATCAGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCACCTCCTACCAAAGAGgtaaaaccccaattttattttattttattttataaaaaaaacagagatttattttgttttgttttttaaggagaaaaattaaaagatgtttttgtttttatttag

Basic information

species Glycine max
transcript GLYMA02G10940.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10940.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G68670.1 (Arabidopsis thaliana), 5'ss of exon 2
ACATTCTCATAAACACACAAAAACCACCACTGATAAAAAGAAATCAGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCACCTCCTACCAAAGAGgtaaaaccccaattttattttattttattttataaaaaaaacagagatttattttgttttgttttttaaggagaaaaattaaaagatgtttttgtttttatttag
   |   ||| ||    |   |          |||| ||||||||||||||||| ||||| |||||| | |||||||   || ||||   |     | |   ||||     |||| |  || ||    ||| ||||       ||| ||||    |||||   || | |||| || ||| |   | |  ||   || |       
---TGAACATGAATCTTCTCCAGAACTTGTGAATAATAAGAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAATC---ATTCACCGGATCT---AAATCCAAAAGAGgtatttaaagtt-ttgagctttttaaag------gagtttta----gttttcgattatgagga-aataatcatgtgttaattgaattatag-----

upper sequence: GLYMA02G10940.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g03110.t01 (Vitis vinifera), 5'ss of exon 2
ACATTCTCATAAACACACAAAAACCACCACTGATAAAAAGAAATCAGATTGGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCA---CCTCCTACCAAAGAGgtaaaaccccaattttattttattttattttataaaaaaaacagagatttatttt---gttttgttttttaaggagaaaaattaaaagat----gtttttgtttttatttag---------------------------------
   |  | ||||| |||  || |    ||    |   |||||||| |||||||| ||||| |||||||||||||| |  |  |||   || ||   ||||||||||    |   |    | ||| |   |||||  ||    | |     | || |      |||| |||||    ||||  ||  ||   ||    |||| ||||||  ||||                                  
---TGATAATAAAGACAAGAATAATGACAAGTCTGGGAAGAAATCGGATTGGCTTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacatgaacaaaatttctaacattttgaaattttagctcctctctaatcctacattttttttttctcagagatcaaacaaggaataatggtttatgttttggtttatttcaactaaattttggaaaatttgttgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254328038|gb|GR835003.1|GR835003
EST:     GGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCACCTCCTACCAAAGAG                         GATGTTGTGCCTAGGAAAACTAATGTTGTGGAAGTGAAGAGAAACGGTGGT
genomic: GGCTCAGATCCGTTCAGTTGTGGAATCCCAATCCACCTCCTACCAAAGAGgtaaaacccc ... ttttatttagGATGTTGTGCCTAGGAAAACTAATGTTGTGGAAGTGAAGAGAAACGGTGGT