Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACTTGTGTGAGAGATAAAGCTGTGGAATCACTATGTAGGATTGGATTGCAAATGAGGGAGAGTGATTTGGTTGAGTATTTCATCCCTTTAGTGAAGgtcagattatgctgttccactgatataataaatgcttttgtccttaccatgtattgaatgattgtactttgtagtttgtacgtatagtttttcctttttc...

Basic information

species Glycine max
transcript GLYMA02G10790.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 2
GGAAACTTGTGTGAGAGATAAAGCTGTGGAATCACTATGTAGGATTGGATTGCAAATGAGGGAGAGTGATTTGGTTGAGTATTTCATCCCTTTAGTGAAGgtcagattatgctgttccactgatataataaatgcttttgtccttaccatgtattgaatgattgtactttgtagtttgtacgtatagtttttcctttttc
 || |||||||||||||| |||||||||||||| || |||| ||||||||  || ||||  |||| |||| | ||||| | |||  | ||| | |||||||| || ||| |   ||    ||    | || ||      ||  |     |   || ||| |  |  |||| |  |||||   | | |||| || | |   
AGAGACTTGTGTGAGAGAAAAAGCTGTGGAATCGCTTTGTAAGATTGGATCTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGgttagtttaggagattta--tgtagcactagattacgccgttttgttagttggttcaatcaaag--cttttttttttgttt-tgttgtttgtcttgtag-

upper sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 2
GGAAACTTGTGTGAGAGATAAAGCTGTGGAATCACTATGTAGGATTGGATTGCAAATGAGGGAGAGTGATTTGGTTGAGTATTTCATCCCTTTAGTGAAGgtcagattatgctgttccactgatataataaatgctttt--gtccttaccatgtattgaatgattgtactttgtagtttgtacgtatagtttttcctttttc
||||||||| ||||| || ||||||||||| ||||| ||||| |||||    || |||||||||||||| ||||||||| ||||||  ||| | |  ||||| |||| | |||| |  ||| || | || ||  || ||  |||  |   ||  |||   |     | || |||      ||  |||  ||   ||  |   
GGAAACTTGCGTGAGGGAGAAAGCTGTGGATTCACTTTGTAGAATTGGTGCTCAGATGAGGGAGAGTGACTTGGTTGAGCATTTCACTCCTCTGGCTAAGgttagataaggctggtttacttattttatcaaatctctttggtcgattttattgattccttt-ccatgctctgtcaaactta-atattattaagccactaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719685|gb|BW651059.1|BW651059
EST:     TGCAAATGAGGGAGAGTGATTTGGTTGAGTATTTCATCCCTTTAGTGAAG                         AGATTGGCATCAGGTGAATGGTTCACTGCTCGAGTGTCTTCATGTGGACTA
genomic: TGCAAATGAGGGAGAGTGATTTGGTTGAGTATTTCATCCCTTTAGTGAAGgtcagattat ... ttggtttcagAGATTGGCATCAGGTGAATGGTTCACTGCTCGAGTGTCTTCATGTGGACTA