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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATATTGCGGAGTACTATCAGCAGCAGGTAGAAGTGCTTGAGGGCTTTACTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctatttcatttcctcctctatgctctctagatttaagattgatatgtagtcaaatgcttttgctgaatatcgactggtgtgggcag

Basic information

species Glycine max
transcript GLYMA02G10580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10580.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G39450.1 (Arabidopsis thaliana), 5'ss of exon 2
TAATATTGCGGAGTACTATCAGCAGCAGGTAGAAGTGCTTGAGGGCTTTACTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtt--tctatttcat-ttcctcctc--tatgctctctagatttaagattgatatgta---gtcaaatgct--tttgctgaatatc-----gactggtgtgggcag
 ||| | || || || || |||||||| |||||  |||||||||||||||||||||||||||   | ||||| ||||| ||| ||||||||||||||||||||   |||  | |   | || ||    |   |   |  |   | |||  || |||    ||  | || |  ||| |||||| ||     |  | ||||    ||
CAATGTGGCAGATTATTACCAGCAGCAAGTAGAGATGCTTGAGGGCTTTACTGAAATGGATGAACTTGCAGAACGTGGCTTTGTTCCTGGAATGTCAAAGgttagcctaaatgaggctactacttgtcacatttgttgaaaccatgatgcatttgttcttgttgattgatacttttctgaatttctttgtgttttgtgtacatag

upper sequence: GLYMA02G10580.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g00020.t01 (Vitis vinifera), 5'ss of exon 2
TAATATTGCGGAGTACTATCAGCAGCAGGTAGAAGTGCTTGAGGGCTTTACTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctatttcatttcctcctctatgctctctagatttaagattgatatgtagtcaaatgcttttgctgaatatcgactggtgtgggcag------------------------
| || | || ||||| |||||||||||||||||| |||| |||||||||| |||||||||||| || ||||||| ||| | ||||||| ||||| || |||||  || ||    ||  ||   |  || |     ||||| | |  | |||  |    || | ||| | ||     | ||     | |                          
TGATGTGGCTGAGTATTATCAGCAGCAGGTAGAAATGCTGGAGGGCTTTAATGAAATGGATGCCTTGGCAGAGCATGGATATATTCCTCGAATGACAGAGgttcatactttccatcggccatcaccctattc---tttaaaagtagtgtgttct----tgatcttgttaaactctaaatgcctcagactaaatggtaattgtttgggtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209711680|gb|BW674043.1|BW674043
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
EST: gi|192327381|gb|FK017798.1|FK017798
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
EST: gi|209706831|gb|BW683196.1|BW683196
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
EST: gi|23059354|gb|BU578370.1|BU578370
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
EST: gi|24205761|gb|BU965014.1|BU965014
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
EST: gi|120532846|gb|EH260979.1|EH260979
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
EST: gi|209700720|gb|BW670482.1|BW670482
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
EST: gi|213598774|gb|DB968245.1|DB968245
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
EST: gi|192302471|gb|FG994807.1|FG994807
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
EST: gi|24205669|gb|BU964922.1|BU964922
EST:     CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAG                         GAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA
genomic: CTGAAATGGATGCTTTAGCAGAGCGTGGTTTTATTCCTGGAATGTCAAAGgtttctattt ... gtgtgggcagGAGGAGCAAGACAAGTTAGCAAGAAGTGAGACTTTTGCCATTAGAGTGTCA