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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca...

Basic information

species Glycine max
transcript GLYMA02G10550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g24690.3 (Oryza sativa), 5'ss of exon 2
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca
| || || || || |||||    ||| ||||||| ||||| ||||  ||||| ||||||||||||||||| |||||||||||||| || ||  | ||||||| ||  |     |  |   | | |||  |||  ||  |   || |||   |      | ||     ||||  ||         |    |          
TTGTCTTCATCGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCAGCTGTCAAGAAGATGTATGACATCCAGGCAAAGAAAGTTAACACTCTGATCAGgttattaactcaccttcctttgttcatg-gctgaat--acgcttcattctgtatgttgacaacttggtgtatcgattttctgtaatacag----------

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 5'ss of exon 3
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca
|||| || ||||||||||||   ||  ||||||| ||||| |||| |||||| ||||||||||| ||||| |||||||||||||| || ||  | ||||||| | | |  |  |  |  | ||   | |    |        |||||||| |    |          |||||  ||      ||| |||  |  |     
TGGTCTTCATTGTTGACCTTAAGGCTGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTACGACATCCAGGCAAAGAAAGTGAACACTCTGATCAGgtta-gcactttccttcatacttcattttatcgc--------ttgatttgctaggtag---------tgtagttaactgaccctacttgtcttccag---

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G166659_T01 (Zea mays), 5'ss of exon 3
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca
|||| ||||||||||||||    ||| ||||||||||||| |||| ||| || |||||||||||||||||||| |||||||| ||||| ||  | ||||||| |  |   ||     |  ||   || |  |     || ||||| | | |||   ||   |   | | | ||           |               
TGGTCTTTATTGTTGACCTCAAGGCAGACAAGAAAAAGATCAAGGCTGCGGTCAAGAAGATGTATGACATTCAAGCAAAGAAGGTCAACACCCTGATCAGgttagcgctttgctccagtgtt---attttttgtgcata-atttgttattttgtgcaactgagtgattcttgatgtgtccatgcag--------------

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G124411_T04 (Zea mays), 5'ss of exon 3
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca
| || || ||||| |||||    ||| ||||||| ||||| |||| |||||| ||||||||||||||||||||||| ||||| ||||| ||  | ||||||| | | |  ||     |  ||    |||  | |||    ||||  | |||||   ||      |  | |     |    | ||     ||         
TTGTCTTCATTGTCGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCTGTCAAGAAGATGTATGACATTCAGGCCAAGAAGGTCAACACCCTGATCAGgtta-gcatttggtccagtgttattttcttgtgcata---atttattatgttgtgcaactgtg-agttattcttgattgtgtctgtcctgtccag-----

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G083253_T04 (Zea mays), 5'ss of exon 3
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca
|||| || |||||||||||    ||| ||||||| ||||| |||| ||| || ||||||||||||||||| ||||||||||| ||||| || || ||||||| | | |  || |   |  |     | | || || |  |  ||   ||||  ||  ||| |   | | |          |   |               
TGGTCTTCATTGTTGACCTCAAGGCAGACAAGAAGAAGATCAAGGCTGCCGTCAAGAAGATGTATGACATCCAGGCAAAGAAGGTCAACACCTTGATCAGgtta-gcacttgccccagtgtaattttttcctgcacgatttattatgttgtgcaactaaagagttattcttatcgtgtctgtgcag--------------

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G55280.1 (Arabidopsis thaliana), 5'ss of exon 3
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgc-tacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca
| || || ||||||||| | |||||  ||||||||||||| || |||||||| ||||||||||||||||||||| | ||||||||||| ||  | || ||||||    | | | |   || | | || ||  |  ||||| |  ||   || |||    |       ||| ||                            
TAGTCTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACCCTCATTAGgtaa--acactaaaacttcactgagatatgggtttatgtaaacatggagtgatgagtgtatgtttgtatgcag----------------------------

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca-
| ||||| ||||||||| |||||||  ||||||| ||||||||||||||||| ||||||||||||||||| ||| | |||||||| || ||| | |||||||| |  |||       | ||||   | ||   | |   | |  ||||  ||   |     || | || |      | |  |    ||||||   ||||| 
TTGTTTTCATTGTTGACATTCGTGCTGACAAGAAGAAGATTAAGGATGCTGTTAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACACTCATCAGgtactttaaaga-----gtatttttctatgaagccttgttgtgagattgatt---atgttcaatatattt-----gacactatggtttggttttgttacag

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g00250.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca---
||||||| ||||||||| | |||||  ||||||||||||| || ||||| |||||||||||||| || |||||| | |||||||| || || || ||||||||||    ||   ||  || | || |   | ||||| ||  ||  |  || |  |||  |||    |       |  | | |||  || |||    | |   
TGGTTTTCATTGTTGACATCCGTGCTGACAAGAAAAAGATCAAAGATGCAGTGAAGAAGATGTACGAAATTCAGACCAAGAAAGTTAACACTTTGATCAGgtaatttccat--taattcactcac-ttaacaacatgcattgtttttgggtagggaaaggaaaattcttctttacaccaaggctagatgattaaaagaaataa

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0004g04090.t01 (Vitis vinifera), 5'ss of exon 3
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagc-ttaca---
||||||| ||||||||| ||||||| |||||||| ||||| ||||||||||| || ||||||||||| |||||| | |||||||| |||||  | ||||||||     | |   |   || ||| || |  ||    |||   ||| |  |  |  |   |    |  || || ||| |   |  | |  | |   ||| |   
TGGTTTTCATTGTTGACATTCGTGCCAACAAGAAGAAGATAAAGGATGCTGTTAAAAAGATGTATGATATTCAGACCAAGAAAGTGAATACCCTGATCAGgtatcaatatttttattccaattatattttttat---tatccctgagt-atacagcagttattggatagtcgataaagatatcagacttttcaaagttagattc

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0040g02630.t01 (Vitis vinifera), 5'ss of exon 2
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttac--atctgctacatgtatatt--tg--atttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca
| || || ||||||||| | |||||  |||| || ||||| ||||||||  ||||||| ||||||||||||||| | |||||||| ||||| || |||||||||  ||  | |    | || | |  | | | |  ||  | |||  ||  |||| ||    |     |  |||  | |  |  |  | |  || ||| ||     
TTGTCTTCATTGTTGACATCCGTGCTGACAAAAAGAAGATAAAGGATGCAATGAAGAAAATGTATGACATTCAGACCAAGAAAGTGAATACCTTGATCAGgtaa-agacttcattttgaatcttctcagcagttcaattgaaattattggcatttttttttcagttgcaacaattcatatgattatcattt-tttgttggca----

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S459_11V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcat-ttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggtt--agcttaca
||||||| || || ||  | || ||  ||||||| ||||| || || || || ||||||||||| ||||||||| | ||||| |||||||| || ||||||| ||    |||    | |||  |  || |         | | |  |    |||  |||         || |        |   |   | | |  || ||   
TGGTTTTCATCGTGGATGTGCGCGCCGACAAGAAGAAGATCAAAGAGGCCGTCAAGAAGATGTACGACATTCAGACCAAGAAGGTCAATACTTTGATCAGgtgatt---atgttttcccatgctttatttctcggggcaacactctagggtttgggaaactgggtttttgcaattgcgtcgtgttgtgtagctccagattttc

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S47_274V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctac-atgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca-
|||| || || || ||| | |||||  ||||||| ||||| ||| | ||||||||||| ||||| ||||| ||| | ||||| ||||| ||||| ||||||| || |   |  |      ||   || | || | | ||   || |  || | |||            ||||   |    ||  |   || ||   |  |  
TGGTGTTCATCGTGGACGTGCGTGCGGACAAGAAGAAGATCAAGCAGGCTGTGAAGAAAATGTACGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtgattgtcctc-ctctctgttgggatttccttcgaagtgccttagggttttcgaactgttgtctccttgtaattacgtcggg-tgcctgtttcagtcccgg

upper sequence: GLYMA02G10550.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S146_96V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttag-cttaca-----
||||||| ||||||||  | || ||  ||||||| ||||| ||||| ||||| ||||||||||||||||| ||| | ||||| ||||| ||||| |||||||| |    || |   | | |||     || ||  |       ||  ||   |  ||      ||        |  |  | | | ||  ||||  |  |||     
TGGTTTTCATTGTTGATGTGCGGGCTGACAAGAAGAAGATCAAGGAGGCTGTCAAGAAGATGTATGACATCCAGACCAAGAAGGTCAACACATTGATCAGgtactc---attatcccccctttgt---tgttatgtcctccagtgcgttagggttaagcgtttcagtctcttcgcgattgaattgatatgttattcccacatgggt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195434|gb|HO039265.1|HO039265
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|10253641|gb|BE821407.1|BE821407
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|31464968|gb|CD406996.1|CD406996
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|26059474|gb|CA802388.1|CA802388
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAA
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAA
EST: gi|26059942|gb|CA802856.1|CA802856
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|5677944|gb|AI939074.1|AI939074
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|6725892|gb|AW310291.1|AW310291
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|15664714|gb|BI702085.1|BI702085
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|37996463|gb|CF808052.1|CF808052
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|31465956|gb|CD407984.1|CD407984
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|16344472|gb|BI970067.1|BI970067
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|8284992|gb|BE022551.1|BE022551
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|6912882|gb|AW394412.1|AW394412
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAN                         GCCGGATGGGACAAAGAAAGCCTATTTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|26059369|gb|CA802283.1|CA802283
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGAATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|298199563|gb|HO042926.1|HO042926
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|5688484|gb|AI941499.1|AI941499
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTTCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
EST: gi|192324677|gb|FK016838.1|FK016838
EST:     GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAG                         GCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC
genomic: GTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaa ... ttttatgcagGCCGGATGGGACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTTTTATTGTTGACCTTCGTGCAAACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGACATTCAGGCAAAGAAAGTCAATACATTAATCAGgtaatggaaatgacaacgcatttacatctgctacatgtatatttgatttgttgaaaaaaaaaacaaatgtagagaaaaaggactaattggttagcttaca

- - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA