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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacagtttttttgacacccacatgagttgttgcctttttcgtgattgatttgaatttattttttatgtaatttaatagctgatggcatgtaatgt...

Basic information

species Glycine max
transcript GLYMA02G09030.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G09030.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0072g00630.t01 (Vitis vinifera), 5'ss of exon 2
CCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacagtttttttgacacccacatga-gttgttgcctttttcgtgattgatttgaatttattttttatgtaatttaatagctgatggcatgtaatgt
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----GGCCTCGGGATGGAACCATTCAGTGCTTCATTAAGAGGGACAAGTCCAACTTGACTTACCACCTTTTCCTTTGCCTTAGCCCTGgtaag-attctctctcaacggtttgtttgccgctgattccttttacggattttatgggacatgacttttgttgggctgatgtggatcacaaattaatataa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057345|gb|CA800259.1|CA800259
EST:     GAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTG                         CATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
genomic: GAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacag ... gttcatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA