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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTGCGTTCCCTGTGTGCAGACCTTGCTATGAGTATGAAAGAAGAGAGGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGgtgaagaagcttcaaccaatttttacttagatctctttgtgtgtgtttatgtttctttttcacctgtgtacgtgtttatgtttcttttccaccttagttc...

Basic information

species Glycine max
transcript GLYMA02G08920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 2
GAATGTGCGTTCCCTGTGTGCAGACCTTGCTATGAGTATGAAAGAAGAGAGGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGgtgaagaagcttcaaccaatttttacttagatct-----ctttgtgtgtgtttatgtttctttttcac------ctgtgtacgtgtttatgtttcttttc-caccttagttc---------
|||||||| |||||||| |||||||| ||||| |||||||||||||| |||||||| |||| ||| ||||| || ||||||||||| || |||||||||||| |||  | ||| |  | || ||  ||   |||      ||| | |   | | ||||| ||  || |      |  | ||| || | ||| |||   |   | |  | ||          
GAATGTGCATTCCCTGTATGCAGACCCTGCTACGAGTATGAAAGAAGGGAGGGTAATCAAGCTTGCCCTCAATGCAAAACCAGATACAAACGCATCAAAGgtaaagg-gtttctataatttcttggttgactctgtctcttttctattactctgtgttttttcatcccaaactccactctacttggtgatgattccactaatagcacacttaaaacatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328149|gb|FK022858.1|FK022858
EST:     GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAGAG                         GTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGG
genomic: GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGgtgaagaagc ... ctgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGG
EST: gi|209720456|gb|BW671789.1|BW671789
EST:     GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAG                         GTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGG
genomic: GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGgtgaagaagc ... ctgatttcagGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATAGTGATGATTTGG
EST: gi|213589781|gb|DB959406.1|DB959406
EST:     GGGTAACCGAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAG                         GTAGTCCTAGAGTTGAGGGTGATGAA
genomic: GGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGgtgaagaagc ... ctgatttcagGTAGTCCTAGAGTTGAGGGTGATGAA