Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTTGCAATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAgtatattatttctctatttcttactcttctttttgttatatgattgtgtcatggctttaccatggctcagttgcactagctttagctctgtcatggccag...

Basic information

species Glycine max
transcript GLYMA02G08870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08870.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 5'ss of exon 1
GTAATTTGCAATGGCTGAACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAgtatattatttctctatttcttac--tcttctttttgttatatgattgtg-tcatggctttaccatggctcagttgcactagctttagctctgtcatggccag
|| ||||  |||| | || |||||||| |||||||| ||||| |||||||||||||| ||||| || |||| |||||  |  |  ||  |   |||   | ||  |||||| |||   ||||  |  ||   ||      |  || |||| |   |||     | |    
GTTATTTAAAATGACGGAGCCTTCCAAAGTCATTCATGTTCGTAATGTGGGGCATGAAATATCAGAGgtatgttattctttcaaatcaaatgatctctatatttatatatgcttggaatcatttccatatgttgaacatttctcagtagcatacactcatatctagt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284184|gb|BE021743.1|BE021743
EST:     AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAA                         AATGATTTGCTTCAACTATTTCAGCCTTTTGGAGTAATAACAAAGCTTGTG
genomic: AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAgtatattatt ... ctggttgcagAATGATTTGCTTCAACTATTTCAGCCTTTTGGAGTAATAACAAAGCTTGTG
EST: gi|7684949|gb|AW755597.1|AW755597
EST:     AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAA                         AATGATTTGCTTCAACTATTTCAGCCTTTTGGAGTAATAACAAAGCTTGTG
genomic: AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCATGAGATATCTGAAgtatattatt ... ctggttgcagAATGATTTGCTTCAACTATTTCAGCCTTTTGGAGTAATAACAAAGCTTGTG