1 5' 3' | 2 5' 3' |
TCAAAATACTATGCGCAGAGCTAGCAAGGTGATGACAGAGCAAGAGGCTAGGCAGATTCTTGGTGTTACCGAGGAAACTCCCTGGGAGGAGATTATCAAGgttagtatatcatctttgttgtgggtatattacccatttgttttcgaatttatcacttctaaagtggggaatgcatttggaggatgaagtatactgttat...
species | Glycine max |
transcript | GLYMA02G08820.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCAGATTCTTGGTGTTACCGAGGAAACTCCCTGGGAGGAGATTATCAAG AAATATGACAATTTGTTTGAGAATAATGCCAAAAATGGGAGTTTCTACCTCEST: gi|207833094|gb|GD801799.1|GD801799
genomic: GGCAGATTCTTGGTGTTACCGAGGAAACTCCCTGGGAGGAGATTATCAAGgttagtatat ... tgccatgcagAAATATGACAATTTGTTTGAGAATAATGCCAAAAATGGGAGTTTCTACCTC
EST: GGCAGATTCTTGGTGTTACCGAGGAAACTCCCTGGGAGGAGATTATCAAG AAATATGACAATTTGTTTGAGAATAATGCCAAAAATGG-AGTTTCTACCTCEST: gi|193416521|gb|FK384453.1|FK384453
genomic: GGCAGATTCTTGGTGTTACCGAGGAAACTCCCTGGGAGGAGATTATCAAGgttagtatat ... tgccatgcagAAATATGACAATTTGTTTGAGAATAATGCCAAAAATGGGAGTTTCTACCTC
EST: GGAGGAGATTATCAAG AAATATGACAATTTGTTTGAGAATAATGCCAAAAATGGGAGTTTCTACCTC
genomic: GGAGGAGATTATCAAGgttagtatat ... tgccatgcagAAATATGACAATTTGTTTGAGAATAATGCCAAAAATGGGAGTTTCTACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAAATACTATGCGCAGAGCTAGCAAGGTGATGACAGAGCAAGAGGCTAGGCAGATTCTTGGTGTTACCGAGGAAACTCCCTGGGAGGAGATTATCAAGgttagtatatcatctttgttgtgggtatattacccatttgttttcgaatttatcacttctaaagtggggaatgcatttggaggatgaagtatactgttat
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggga