Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCCGTGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaattccctattcaatttcttaatggacgtttctgttattggcaaattccctatacgatcatgctctgatgttaattttttatcttttaatgtgatttgtctattactgcttgcag

Basic information

species Glycine max
transcript GLYMA02G08700.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 2
GCTGCCGTGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaa-attccctattcaatttcttaatggacgtttctgttattggcaaattccctatacgatcatgctctgat--gttaattt---tttatcttttaatgtg------atttgtctattactgcttgcag-----------------------------
|| |   ||||||| |  |||||||||||||| ||||| ||||| ||||| |||||||| || ||||| || || |||||| |  |||| || ||||||||||| |    ||||  |||| || | | |  | ||   || |     ||| || | | ||  | |  | ||    |||    |      | || |   ||||      |   |||   |  |   |||                               
GCAGTGCTGGATGCTGGAGCATGGATGTTCAACGTTGTGACATCAGTTGGTATCATCATGGTCAACAAGGCATTAATGGCCACACATGGTTTTAGTTTTGgtaagacatgctat--aattcctcactcg-tggttgaattgtcaa-gaatgccttgtccgcacgtcttatggatagttggactaaaccgaactatcgttgtgcagcaaaccagtcagattttttgtgctaatgatgtgttccattgtgtgtttgtgcag

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G823629_T03 (Zea mays), 5'ss of exon 1
GCTGCCGTGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaa----attccctat-tcaatttcttaatg-----gacgtttctgttattggcaaattcccta----------------tacgatcatgctctgatgttaattttttatcttttaatgtgatttgtctattactgcttgcag------
|| ||  | ||||| |  ||||||||||||||||| || ||||||||||| |||||||| || |||||||  || |||||  || ||||||| |||||||||||    || ||| || |  ||| || | ||     || |  |   | |   ||   |||  |                 ||| ||  |||    |  || | | |   | | ||    | ||||||  | |||   ||||        
GCAGCACTAGATGCTGGCGCATGGATGTTCAATGTCGTCACATCTGTTGGTATCATCATGGTCAACAAAGGCTTAATGGCGACTCATGGCTTTAGTTTTGgtaagagcatgcccaatcttcattcctaactgcatgcgatgcctgattcacgcgcgccttcttttctatctaaaagtaaactactattgtgcagaaaaattcagtctgcttgtcttgtgctaatttgttcactaccttttgctcctacag

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
GCTGCCGTGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaattc---ccta---ttcaatttcttaatggacgtttctgt-tattggcaaattc-cctatacgatcatgc---tctgatgttaattttttatctt--------ttaatgtgatttgtctattactgcttgcag----------------------------------------------------
|| ||  | || || |  ||||||||||||||||| || ||||| ||||| |||||||| || |||||||| || |||||  |  |||| || ||||| |||||   |   || |   ||   || ||  |    |||    ||    || | ||||| ||       |  |     ||| |   |||  |   || ||          | | | |||   ||||  |||     ||                                                    
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGCCGTGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaattccctattcaatttcttaatggacgtttctgttattggcaaattccctatacgatcatgctctgatgttaattttttatcttttaatgtgatttgtctattactgcttgcag
||  |  | ||||| ||||| |||||||||||||||||||| |||||||| ||||||||||| || |||||||| |||||  |||||||||| || |||||||  |   ||     |   | | ||  ||  |  | |  |   ||||||   | |   ||  |  |   || | |||                                        
GCAACATTAGATGCTGCTGCTTGGATGTTCAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTATGGCTTTAGCTTTGgtacttcttcttcatcaaaaccttatttacaatcatatctt---caaattatttgtctaatatt--ttcaatttcaatgcag------------------------------------

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 2
GCTGCCGTGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaa--ttccctattcaatttcttaatggacgtttctgttattggcaaattccctatacgatcatgctctgatgttaattttttatcttttaatgtgatttgtctattactgcttgcag
|| ||||| ||||| ||||| |||||||||||||| || || |||||||| ||||||||||| || |||||||| |||||  ||||||| |  || |||||||||  || |   ||   | |       |||||||   ||       ||  |  ||  | ||  | ||    |||| | || | || ||  |                           
GCAGCCGTAGATGCTGCTGCGTGGATGTTCAATGTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTATAGCTTTGgtaaagatttctcttttgctcttacttaagacgttttctttg------aaacctgta-gctattcttctaatttgtttacttatcatgttgcag--------------------------

upper sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 1
GCTGCCGTGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaattccctattcaatttcttaatggacgtttctgttattggcaaattccctatacgatcatgctctgatgttaattttttatcttttaatgtgatttgtctattactgcttgcag
|| ||  | |||||||| |||||||||||||||||||| || |||||||| || ||| |||| |||||||| || |||||  | ||||| |||||||||||||| |||  |  | || |    |||   ||||| | |  |||   |||| | | | |         ||| |||  ||||||||  |     ||||  |  |   | ||| |||    
GCAGCACTAGATGCAGCCGCATGGATGTTCAATGTTGTCACTTCTGTTGGGATTATCCTTGTCAACAAAGCATTAATGGCTACATATGGATTCAGTTTTGgtaa-ttcttttctaaagt---aaatttgcgttttt-tctttgattaatttcttttgc---------ctg-tgtatattttttacatgcatgtgtggataattc-tcacttcttaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166844|gb|HO010283.1|HO010283
EST:     AATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTG                         CCACAACATTAACAGGCATGCACTTTGCTACCACAACTTTGATGACAGTTG
genomic: AATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaattccc ... ctgcttgcagCCACAACATTAACAGGCATGCACTTTGCTACCACAACTTTGATGACAGTTG
EST: gi|151408897|gb|EV278705.1|EV278705
EST:     AATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTG                         CCACAACATTAACAGGCATGCACTTTGCTACCACAACTTTGATGACAGTTG
genomic: AATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaattccc ... ctgcttgcagCCACAACATTAACAGGCATGCACTTTGCTACCACAACTTTGATGACAGTTG
EST: gi|13789409|gb|BG652000.1|BG652000
EST:     AATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTG                         CCACAACATTAACAGGCATGCACTTTGCTACCACAACTTTGATGACAGTTG
genomic: AATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaattccc ... ctgcttgcagCCACAACATTAACAGGCATGCACTTTGCTACCACAACTTTGATGACAGTTG
EST: gi|192329849|gb|FK023353.1|FK023353
EST:     AATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTG                         CCACAACATTAACAGGCATGCACTTTGCTACCACAACTTTGATGACAGTTG
genomic: AATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaattccc ... ctgcttgcagCCACAACATTAACAGGCATGCACTTTGCTACCACAACTTTGATGACAGTTG