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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGAGCCAGAAGGAAAATTTTACTTCTCTGCAACTGCTGGTGCAGAGAAGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcagtgacctgatggtttgttaatcatatctttttcatctatcttgtaattagtgtggtactatgtcttctcag

Basic information

species Glycine max
transcript GLYMA02G08440.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08440.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g01940.t01 (Vitis vinifera), 5'ss of exon 3
ACTGGAGCCAGAAGGAAAATTTTACTTCTCTGCAACTGCTGGTGCAGAGAAGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcagtgacctgatggtttgttaatcatatctttttcatctatcttgtaattagtgtggtactatgtcttctcag--------------
| | ||||| || || ||||| | ||||||||| ||   ||| || || ||||| ||||||||| ||||||||||||||||||||||  |||||||||||||| |  |    |||  |    | |||       |   |  ||||||| || ||||||  |   |  |  | ||| |                 
ATTAGAGCCTGAGGGGAAATTCTTCTTCTCTGCCACCAGTGGAGCTGATAAGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttcccgaaccataataatggttttctcccttagtcacatctat-ttataattatcggaatcatgaggcttattgatatgatgtctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7042420|gb|AW472314.1|AW472314
EST:     AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
genomic: AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... gtcttctcagAATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
EST: gi|254343607|gb|GR857363.1|GR857363
EST:     AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
genomic: AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... gtcttctcagAATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
EST: gi|298162968|gb|HO011701.1|HO011701
EST:     AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
genomic: AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... gtcttctcagAATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
EST: gi|9985951|gb|BE659957.1|BE659957
EST:     AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
genomic: AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... gtcttctcagAATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
EST: gi|298172800|gb|HO020354.1|HO020354
EST:     AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
genomic: AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... gtcttctcagAATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
EST: gi|213619772|gb|DB967394.1|DB967394
EST:     AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAA
genomic: AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... gtcttctcagAATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAA
EST: gi|192302804|gb|FG998486.1|FG998486
EST:     AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAACCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG
genomic: AGATTCCTTATGAAGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... gtcttctcagAATAGCAAAGCCAGTGTTGGTTCAAGACACATCTGCTACTTGGTGAAAAAG