Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctttgctttgttgatagttgtagttgaatatgagttcatacttcattacaattatccataccttgttgattccatgattgtatgtattgtattaatag

Basic information

species Glycine max
transcript GLYMA02G08010.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08010.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 2
CAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctttgctttgt-tgatagttgtagttgaatatgagttcatacttcattacaattatccatacct-----tgttgattc--catgattgtatgtattgtattaatag-----------
   ||||||||||| || |||||||||||||||||||||||||||||||  ||||||||||| |||||||| |||||||||||||| || || ||||| || || | ||    | ||  |  |    |||      |||| |  | |  |  |||     ||    |  |     |||||   |    || |  | |  ||| |   |||             
---CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAAACATCATACGAGGACAATATAAAGAAAATTGTGGATTTCAGTACAgtaagattttcttctagtacggcatgcctagagtgtgatgaatgaaaatctagttatgtcaatgtgaatttacttttgttggcccattgtgttgatctagattttgaaaattatatgtacctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326526|gb|AW620324.1|AW620324
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|11687403|gb|BF595079.1|BF595079
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|9565360|gb|BE474869.1|BE474869
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|18041218|gb|BM309512.1|BM309512
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|15662834|gb|BI700205.1|BI700205
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|151412337|gb|EV282149.1|EV282149
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|17401526|gb|BM178308.1|BM178308
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCCGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|151403487|gb|EV273297.1|EV273297
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298194936|gb|HO043408.1|HO043408
EST:     ATCAAGCATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298193383|gb|HO033817.1|HO033817
EST:     ATCAAACATCATATGAGGGCAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|17023729|gb|BM094763.1|BM094763
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|15203071|gb|BI425839.1|BI425839
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298187089|gb|HO034238.1|HO034238
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298189597|gb|HO038000.1|HO038000
EST:     ATCAAACATCATATGAGGACAACATAAAGAAGATTGTTGAGTTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298183125|gb|HO028388.1|HO028388
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298176584|gb|HO023171.1|HO023171
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|209726130|gb|BW675305.1|BW675305
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAGGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|193699254|gb|FK637679.1|FK637679
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|120495839|gb|EH224006.1|EH224006
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|192316836|gb|FK006077.1|FK006077
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTTGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|120531368|gb|EH259501.1|EH259501
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|4313775|gb|AI460894.1|AI460894
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|21995195|gb|BQ786723.1|BQ786723
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298180864|gb|HO022303.1|HO022303
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|207794720|gb|GD764807.1|GD764807
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTG
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTG
EST: gi|120496028|gb|EH224195.1|EH224195
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|192316837|gb|FK006078.1|FK006078
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTTGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|16347369|gb|BI972964.1|BI972964
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|16996513|gb|BM085885.1|BM085885
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298181032|gb|HO022471.1|HO022471
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|9899538|gb|BE608506.1|BE608506
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|254324772|gb|GR834197.1|GR834197
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298164570|gb|HO014215.1|HO014215
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|213588418|gb|DB959738.1|DB959738
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|11687361|gb|BF595037.1|BF595037
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|193542266|gb|FK494040.1|FK494040
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|192323024|gb|FK016755.1|FK016755
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|254324093|gb|GR840518.1|GR840518
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298168114|gb|HO013377.1|HO013377
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|19453543|gb|BM954953.1|BM954953
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298176568|gb|HO023155.1|HO023155
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298196163|gb|HO044554.1|HO044554
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|8285169|gb|BE022728.1|BE022728
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|6341462|gb|AW164286.1|AW164286
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|192322879|gb|FK014810.1|FK014810
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298196429|gb|HO041172.1|HO041172
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|6482757|gb|AW201979.1|AW201979
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298163689|gb|HO012422.1|HO012422
EST:     ATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|10848096|gb|BF070649.1|BF070649
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|298174013|gb|HO017349.1|HO017349
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|19452727|gb|BM954137.1|BM954137
EST:     AAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: AAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
EST: gi|151410799|gb|EV280614.1|EV280614
EST:     ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACG                         GTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA
genomic: ATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctt ... gtattaatagGTTGAAGGATTTTGGGTCTGCTACTGCCATCTTGCTCGTCCTGCTTCTTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAAACATCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGgtgaggtctttgctttgttgatagttgtagttgaatatgagttcatacttcattacaattatccataccttgttgattccatgattgtatgtattgtattaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA