Sequence
atgc intronic sequence ATGC exonic sequenceTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAGgtacgtcaaattcccaatcacaccaaaacattcgcgactatttacggttgcggttccgttgcgatccttgatattgtggaaaattacagataaatgtggctgcaatttcattatgcttgatctgttttctgtgtgtgtgtgttcgtgcag
Basic information
species | Glycine max |
transcript | GLYMA02G07260.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 2
TTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAGgtacgtcaaattcccaatcacaccaaaacattcgcgactatttacggttgcggttccgttgcgatccttgatattgtgg--aaaattacagataaatgtggctgcaatttcattatgcttgatctgttttctgtgtgtgtgtgttcgtgcag
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TTCAACGTCCCCGATCTCCGCGTCGGCACGCTCGACTCCCTCCTCGCCCTCAGCGACGATCTCGTCAAGgtaacccatctcttctcttctccccgatc--tcgatctcccttgccccc-cagctctcacgcgattcctattattcctgccgctgctgcag-------------------------------------------------------------
upper sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G144372_T01 (Zea mays), 5'ss of exon 2
TTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAGgtacgtcaaattcccaatcacaccaaaacattcgcgactatttacggttgcggttccgttgcgatccttgatattgtggaaaattacagataaatgtggctgcaatttcattatgcttgatctgttttctgtgtgtgtgtgttcgtgcag
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TTCAACGTCCCGGATCTCCGCGTCGGCACCCTCGACTCGCTTCTCGCCCTCAGCGACGACCTCGTCAAGgttccccccgccgcctttgcttcccgcacgatctcga---tctccgttt----tcccacctctaacgtctgctgccccgagcactagcctctgattcgatgccatctataccctgcccgcag----------------------------
upper sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G177912_T02 (Zea mays), 5'ss of exon 2
TTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAGgtacgt-caaattcccaatcacaccaaaacattcgcgactatttacggttgcggttccgttgc-gatccttgatattgtggaaaattacagataaatgtggctgcaatttcattatgcttgatctgttttctgtgtgtgtgtgttcgtgcag
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TTCAACGTCCCGGACCTCCGCGTCGGCACCCTCGACTCCCTCCTCGCGCTCAGCGATGACCTCGTCAAGgtatgtgtgggctgcccggccccttcggttctcca-gtctcttccggagttcgctgccgcccccgagcattagtctaatcttgggtt-cgattccgggccact-ctgcctcacttcgtcctccctctcctccgccag---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298166776|gb|HO010215.1|HO010215EST: GCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAG TCGAACAGTTTCGTGGAGGGAGTGTCGCACAAGATCAGGCGGCAGATTGAG
genomic: GCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAGgtacgtcaaa ... gttcgtgcagTCGAACAGTTTCGTGGAGGGAGTGTCGCACAAGATCAGGCGGCAGATTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATACCGTCAAGgtacgtcaaattcccaatcacaccaaaacattcgcgactatttacggttgcggttccgttgcgatccttgatattgtggaaaattacagataaatgtggctgcaatttcattatgcttgatctgttttctgtgtgtgtgtgttcgtgcag
- - - - - - - - - - - - - - - - - - - CTCCTC