Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGCTCCTTGATCATCAGTCAAACCAGGCATATTGgttctttctcaagccagacttagtttgtttttcacttttaagagcttctacattctctctcaactgaaatttagagtgtatatcgatgtttattggtccttatatgaatgtctttggtag

Basic information

species Glycine max
transcript GLYMA02G07210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07210.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G015854_T01 (Zea mays), 5'ss of exon 2
--------GAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGCTCCTTGATCATCAGTCAAACCAGGCATATTGgttctttctcaagccagacttagtttgtttttcacttttaagagcttctacattctctctcaactgaaatttagagtgtatatcgatgtttattggtccttatatgaatgtctttggtag
        || || || ||||| ||||||||||||||| ||||||| || | |||  | ||| | ||| ||||||| || ||||||||| | ||||| |||||||| | ||    |||  || |   ||  | ||| | |    ||| |   ||  ||     |   ||    |||   | |||| | |||  || |   |   | |                     
AAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAAGATCTTAACAGCGGGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggatttacactct-gctacttttcatgtgtatctttgatttga---ctattatgcgattggtcg---gaagcattgagt-tctatgaatttgcttcttttcc--------------------

upper sequence: GLYMA02G07210.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
--------GAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGCTCCTTGATCATCAGTCAAACCAGGCATAT--TGgttctttctcaagccagacttagtttgtttttcacttttaagagcttctacattctctctcaactgaaatttagagtgtatatcgatgtttattggtccttatatgaatgtctttggtag
        || || || ||||| || |||||||| ||| |||||||  | |||||| | || |||||| ||||| | |||||||||||  | || |||||||||||  |||||||||||||| ||    ||   |   | || |||   ||  | | |||   | | |   |  |    ||    || | | |  || ||| ||  || || | ||  | || |  |   
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcc---tttttctctatattaactg--aactgttactatgct-tgttgtagtttgtgttatttgtct-tgtttatatttctt--tctttctctgggtatcctcag---

upper sequence: GLYMA02G07210.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
--------GAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGCTCCTTGATCATCAGTCAAACCAGGCATATTGgttctttctcaagccagacttagtttgtttttcacttttaagagcttctacattctctctcaactgaaatttagagtgtatatcgatgtttattggtccttatatgaatgtctttggtag
        || ||||| ||||| ||||||||||||||| |||| |||||||||||| | ||||| ||| | ||||| ||| |||||||| | |||||||||||||||||||||||||| ||||        ||| | ||| |  || || |    ||    ||| |    | |  | ||   |    ||     | ||   | | | |                    
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcc--------tttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt--------------------