Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192311483|gb|FK005214.1|FK005214EST: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCA GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST:
gi|192298676|gb|FG988572.1|FG988572EST: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCA GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST:
gi|151400445|gb|EV270259.1|EV270259EST: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCA GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST:
gi|16105750|gb|BI893490.1|BI893490EST: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCA GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST:
gi|192311484|gb|FK005215.1|FK005215EST: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCA GAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
genomic: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
EST:
gi|192333864|gb|FK025125.1|FK025125EST: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCA GAAAGCAACTAATGGTAAAGGTTGCAGAGATGATACCTAGGCATCATGGAA
genomic: GTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCAgtaagattta ... tgttttgcagGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAGACAAGGCGTACCCTCGTGATTTCATGCAGAGAGGGCGCGTGAGGGTGTTGCTGAAGAAGGAGGATGGAACTCTCTTTAATTCAACCATCTCATCCAgtaagatttaatctttctaccctttttatgtttttttttttaatatatgaatatgaatctgaatcaatatgttgcttttggctattattttcattcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA