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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGTTTATGCAAGGGCCTTGCGGTGGTGCTTGTTTGCGGTCACATTGCGGTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGgtaccctgccctaacatagtgaattgcatgttacactatgcataattaaaatgtgtatatatggttttaaattgcaccgcaacatcaaggtattttgact...

Basic information

species Glycine max
transcript GLYMA02G07160.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796895|gb|AW782289.1|AW782289
EST:     GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
genomic: GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGgtaccctgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
EST: gi|16105843|gb|BI893583.1|BI893583
EST:     GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
genomic: GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGgtaccctgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
EST: gi|22523529|gb|BU082340.1|BU082340
EST:     GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
genomic: GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGgtaccctgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
EST: gi|192312614|gb|FK004302.1|FK004302
EST:     GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
genomic: GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGgtaccctgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
EST: gi|7284243|gb|AW596839.1|AW596839
EST:     GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
genomic: GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGgtaccctgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
EST: gi|15204143|gb|BI426911.1|BI426911
EST:     GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
genomic: GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGgtaccctgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
EST: gi|192312613|gb|FK004301.1|FK004301
EST:     GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAG                         GACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC
genomic: GTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGgtaccctgcc ... cattttgcagGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGTTTATGCAAGGGCCTTGCGGTGGTGCTTGTTTGCGGTCACATTGCGGTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGgtaccctgccctaacatagtgaattgcatgttacactatgcataattaaaatgtgtatatatggttttaaattgcaccgcaacatcaaggtattttgact

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT