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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGCTTCACAGAGAATGAGGCAGAAACTTGAAGAAGTAAATGTGGCTGCTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttccagtccttttctgtaacaagtaatttagtgtttgcttatactattgtttccagtacttaatgtttccttagaagattggatggtattatgcc...

Basic information

species Glycine max
transcript GLYMA02G06480.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187975|gb|HO031932.1|HO031932
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|298165398|gb|HO011447.1|HO011447
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|298171875|gb|HO021467.1|HO021467
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|298185727|gb|HO030940.1|HO030940
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGA-GCAAAAGGCGG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|193473397|gb|FK438736.1|FK438736
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTG
EST: gi|298193579|gb|HO040227.1|HO040227
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|151413045|gb|EV282853.1|EV282853
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|9203807|gb|BE330031.1|BE330031
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCA-                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|298167850|gb|HO013113.1|HO013113
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTCTAAGTGTGCATATGAGTGCTTTGATAGGAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|298186773|gb|HO037406.1|HO037406
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|120528844|gb|EH256978.1|EH256978
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|23058483|gb|BU578317.1|BU578317
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAT                         AATGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
EST: gi|192327573|gb|FK021278.1|FK021278
EST:     CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAG                         AAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG
genomic: CTCAAACTAATCTTGCCCCTGTCCAAGACTATGTCAATTATACACTCCAGgttttttcca ... ataattgcagAAAGCATATTTTAAGTGTGCATATGAGTGCTTTGATAGAAGCAAAAGGCAG