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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAGCAAGATGATAAAAGCAGTGCTGGTGTTGAACACGCAGGGGAAGCCTCGTCTCGCCAAATTCTACGAATTTCAGgtcccttgccgtccacatttccatttatcgttctattgacgcaattttcacacagttttttttttttgtggtggtgtggtagatcag

Basic information

species Glycine max
transcript GLYMA02G06350.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06350.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ36156 (Selaginella moellendorffii), 5'ss of exon 1
AAAGAAGCAAGATGATAAAAGCAGTGCTGGTGTTGAACACGCAGGGGAAGCCTCGTCTCGCCAAATTCTACGAATTTCAGgtcccttgccgtccacatttccatttatcgttctattgacgcaattttcacacagttttttttttttgtggtggtgtggtagatcag
           |||||  | || ||||| ||| ||||||||||||||||||| || |||||||| || ||| |||  | |||    |   ||      |  |  ||   | || || || | |||||| |                                     
-----------ATGATTGATGCCGTGCTCGTGATGAACACGCAGGGGAAGCCGCGGCTCGCCAAGTTTTACAAATCGCTGgtaggatttggtttttgctagcgcttgctgatcgatcgatggaatttttag------------------------------------

upper sequence: GLYMA02G06350.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ18661 (Selaginella moellendorffii), 5'ss of exon 1
AAAGAAGCAAGATGATAAAAGCAGTGCTGGTGTTGAACACGCAGGGGAAGCCTCGTCTCGCCAAATTCTACGAATTTCAGgtcccttgccgtccacatttccatttatcgttctattgacgcaattttcacacagttttttttttttgtggtggtgtggtagatcag
           |||||  | || ||||| ||| ||||||||||||||||||| || |||||||| || ||| |||  | |||    |   ||      |  |  ||   | || || || | |||||| |                                     
-----------ATGATTGATGCCGTGCTCGTGATGAACACGCAGGGGAAGCCGCGGCTCGCCAAGTTTTACAAATCGCTGgtaggatttggttttttctagcgcttgctgatcgatcgatggaatttttag------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193416685|gb|FK383245.1|FK383245
EST:     GCAGGGGAAGCCTCGTCTCGCCAAATTCTACGAATTTCAG                         TCCGTGGAGAAGCAGCATGATGCTATTCGCAATGTGTTTTCAG
genomic: GCAGGGGAAGCCTCGTCTCGCCAAATTCTACGAATTTCAGgtcccttgcc ... ggtagatcagTCTGTGGAGAAGCAGCATGATGCTATTCGCAATGTGTTTTCAG