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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAgtaactccctccctcactcttactgcgtgtttggatgatggctgatagaattgattttgaagtgaaattcaggataaactttttcatctaatgctgaaac...

Basic information

species Glycine max
transcript GLYMA02G06190.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06190.3 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g50360.1 (Oryza sativa), 5'ss of exon 1
TAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAgt----aactccctccctcactcttactgcgtgtttggatga----tggctgatagaattgattttgaagtgaaattcaggataaactttttcatctaatgctgaaac
|   ||| ||||  ||||  ||||| ||||||||||| |||||||| ||||| ||||||||  |||| ||||| |||||||| ||||| ||||| |||||||    ||  ||| | |  | |||   |  || |||   |      |  | ||  ||   |||| | ||    | ||  |  |  || ||||  | |   | |     
TGCGGGAGATGGCGAAGACGGCCGCCTGGAGCGTCAGCTCCTGCAAGCCCGGCAACGGCGTCGCCTCCCTCCGCGACGACAACCTCGACACCTACTGGCAgtcagtaaaacccgctccaaatctccatttgtttttccttcttctttttccgagggaggagattgttaatgtgatttgggttttgacattttttttttgggttag---

upper sequence: GLYMA02G06190.3 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G054247_T03 (Zea mays), 5'ss of exon 1
TAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAgtaactccctccctcactcttactgcgtgtttggatgatggctgatagaattgattttgaagtgaaattcaggataaactttttcatctaatgctgaaac
|    || ||||  ||||  ||||| ||||||||||||||||||||  |||| ||||||||  |  | || || |||||||| ||||| ||||| ||||||| | |   || |    | ||  |   |||     |  | |  | |||||  | |        |  |||| ||     |  |||  | | |         
TGCGAGAGATGGCGAAGACGGCCGCGTGGAGCGTCAGTTCCTGCAAGGCCGGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggatcaccttttttt-ttctttgtcgaattagttgaagctagaa--ggtcagagttggtgattcgggtcctgcgatttggtttcag--------

upper sequence: GLYMA02G06190.3 (Glycine max), 5'ss of exon 2
lower sequence: AT2G18290.1 (Arabidopsis thaliana), 5'ss of exon 1
TAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAgtaactccctccctcactcttactgcgtgtttggatgatggctgatagaattgattttgaagtgaaattcaggataaactttttcatctaatgctgaaac-----
|||  || ||||| || || || ||||||||||| || || || || ||||| || |||||  || ||||||| |||||||||||||| || ||||||||||        |    |     |||     | |      |  || ||    |||  | |  | | || |  |||||     ||||  | |  | ||||||      
TAAGAGAGATGGGTAAAAACGCAGCTTGGAGCGTTAGCTCTTGTAAGCCCGGCAATGGCGTCACCACTCTCCGCGACGACAATCTCGAGACTTATTGGCAgttgagaaaacgaaaaaaaa-actaaagctcttatctttccctcattct-ttgtctct--attcaattaaaggattcgacttttt-tttgtttctgaaattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4397247|gb|AI496244.1|AI496244
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAgtaactccct ... gtgcttacagATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGT
EST: gi|6848381|gb|AW350671.1|AW350671
EST:     GGTAACGGCGTTTCCTCTNNNNGTGACGACAATCTCGAAACCTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAgtaactccct ... gtgcttacagATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGT
EST: gi|6567209|gb|AW234820.1|AW234820
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAgtaactccct ... gtgcttacagATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGT
EST: gi|192310829|gb|FK000315.1|FK000315
EST:     GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCA                         ATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGT
genomic: GGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAgtaactccct ... gtgcttacagATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGT