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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatcattcaaattcaatcaagcttcgagttgttgctgctgctttatgctttcactaatgctgtttgattgatgtgctggtgtgttttgtaattca...

Basic information

species Glycine max
transcript GLYMA02G05630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 5'ss of exon 2
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatcattcaaattcaatcaagcttcgagttgttgctgctgctttatgctttcactaatgctgtttgattgatgtgctggtgtgttttgtaattca--
|||| ||||||||||| |||||||| || |||||||| || |||||||| || ||| |||| |||||||||||||||||||| ||||| ||||| || |||||  |  | |   | | |  ||     ||   |   | || || ||   | |    |   |     | | |||  |  |||      |  ||| |  |   
TCTTCGACGGTTACGCCCACCTCTCCTCCGGTCTCGCCTGCGGCCTCGCCGGTCTCGCCGCCGGCATGGCCATCGGCATCGTCGGCGACGCCGGAGTCAGgtaccctccctctcattcccctcctcagtcccatc--tactactactaattacaacaagggagtagttattattattaagctttcaattgctgttagcctgc

upper sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g34510.1 (Oryza sativa), 5'ss of exon 1
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatcattc--aaattcaatcaagcttcgagttgttgctgctgctt---tatgctttcactaatgctgtttgattgatgtgctggtgtgttttgtaattca
|||| ||||| |||||||||||||| || || ||||| || |||||||| |||||| |||| || ||||||||||||||||| ||||| ||||| || ||||  ||  ||| |  |||| |   | | |    |  ||||     |  ||   | ||  ||   ||||  |  |      ||| | |    | |  || | |   
TCTTCGACGGCTACGCGCACCTCTCCTCCGGCCTCGCGTGCGGCCTCGCCGGCCTCGCCGCCGGGATGGCCATCGGCATCGTCGGCGACGCCGGCGTCAGgttatccccatcccgaaatcccccccacccaaaatgtgttaaactttttttgatgtggatttgttaataatactccgg-aatgaggtaaaat-tgctgaact---

upper sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g06890.1 (Oryza sativa), 5'ss of exon 2
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatcattcaaattcaatcaagcttcgagttgttgctgctgctt-tatgctttcactaatgctgtttgattgatgtgctggtgtg-ttttgtaattca----
|||||||||| |||||||| || || || || ||||| ||||||||||| || ||| | || || ||||||||||||||||| || ||||| ||||| |||||   ||  | |    |   |  | ||  ||  ||| | |  ||  | |||||| | |||   |||||   |||| ||     || || |||| | ||  |    
TCTTTGACGGCTACGCGCATCTGTCGTCCGGGCTCGCCTGTGGCCTCGCCGGTCTCGCTGCCGGAATGGCCATCGGCATCGTCGGTGATGCTGGTGTCAGgtaaagatgctgcctgctttgttgatctgtga--tgtagttagtgtgtatatgctgttact---gctgtgc-attggtgattaagtatggttttatgatggaagct

upper sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G893252_T01 (Zea mays), 5'ss of exon 2
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtatt-catcattcaaatt-caat---caagcttcg-agttgttgctgctgctttatgctttcactaatgctgtttgattgatgtgctggtgtgttttgtaattca
|||| ||||| |||||||||||||| || || ||||| || ||||||||||||||| | || |||||||||||||||||||| || || ||||| |||||||| |  |  | ||  ||| || |   ||  ||| | |  |||   ||||  || || ||      ||      |   | |    |||  |       | ||||  
TCTTCGACGGCTACGCGCACCTCTCCTCCGGACTCGCCTGCGGCCTCGCTGGCCTCGCTGCCGGCATGGCCATCGGCATCGTCGGAGACGCCGGAGTTAGgtactgtaatactctgattgcagttgccatcctttgtacatgtccatgctaattgattctcagggaaaaaaaact--gtcgccaggct--tagaccaagcaatt--

upper sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G028432_T01 (Zea mays), 5'ss of exon 1
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattca---tcattcaaattcaatcaagcttcgagttgttgct--gctgctttatgctttcactaatgctgtttgattgatgtgctggtgtgttttgtaattca
|||||||||| || || ||||| || || || || || ||||| || ||||| ||  | || ||||||||||| ||||||||||| ||||| ||||| |||||   |   |   ||  ||   ||   |||    | | | | |  |||| |  ||    |    ||||| |    | | ||| || ||    || |  || |  
TCTTTGACGGCTATGCCCACCTGTCGTCCGGCCTTGCCTGTGGTCTTGCTGGGCTTGCTGCAGGCATGGCCATTGGCATCGTTGGTGATGCTGGTGTCAGgtaaagacgcttcctcttatcatattctgctatatgctttggtttggctgata-atatgctggtcaatgcagcagcagtaatg-gcaggcac-ttctaaaact--

upper sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
lower sequence: AC216067.3_FGT002 (Zea mays), 5'ss of exon 2
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtat--tcatcattcaaattcaatcaagcttcgagttgttgctgctgctttatgctttcactaatgctgtttgattgatgtgctggtgtgttt-tgtaattca
| ||||| || ||||| ||||| || || || || || |||||||| ||||| ||  | |||||||||||||||||||| ||||| ||||| || || |||||       |  ||   ||  |     | ||   |  || ||    | || | ||   |    | || ||  ||      ||  |  ||||  | |  | | 
TTTTTGATGGCTACGCTCACCTTTCGTCCGGGCTTGCCTGTGGCCTTGCTGGGCTTGCAGCTGGCATGGCCATCGGCATTGTTGGTGATGCTGGAGTCAGgtaaagctccctctctctttgtagtggacatcatatatttactatgtccttttcctactatc--tactattcaatgccatggccagaatgttgatattgtgc-

upper sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G19910.1 (Arabidopsis thaliana), 5'ss of exon 2
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatcattcaaattcaatcaagcttcgagttgt-tgctgctgctttatgctttcacta-atgctgtttgattgatgtgctggtgtgttttgtaattca
| || || || || || || |||||||| ||||| |||||||| |||||||| |||||||| || ||||| || || || || |||||||||||||||||||| |  ||  | |||||     |      |  |    |  | |   |    |  | |  |  |  || ||      || |  | | |  |  | | |||| 
TATTCGATGGCTATGCTCATCTCTCTTCCGGTCTTGCTTGTGGTCTCGCTGGTCTCTCCGCCGGTATGGCTATTGGAATTGTCGGCGATGCCGGTGTTAGgtaattctcgattaaatttctctatatgatgtataacctaattcaattggtcgaatacgttggaaacttttcagaaaatatcttag-gcttggtttgattc-

upper sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatcattcaaattcaatcaagcttcgagttgttgctgctgctttatgctttcactaatgctgtttgattgatgtgctggtgtgttttgtaattca-
| || || || || || || |||||||| || || |||||||| || ||||| ||||| ||||| ||||| || || ||||| || ||||| ||||||||||| |    ||      |  ||  | |||     | |   ||| ||  | |   |  | |    ||  || |    | |    |   | |||||  ||   
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatctctgctacat-gatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203285|gb|BE329509.1|BE329509
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|208144771|gb|GD943096.1|GD943096
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|13181537|gb|BG352877.1|BG352877
EST:     GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|193347254|gb|FK313028.1|FK313028
EST:     CCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: CCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT
EST: gi|193438107|gb|FK402154.1|FK402154
EST:     GCCTCTCCGCTTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAG                         AGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT
genomic: GCCTCTCCGC-TGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatca ... tcttttgcagAGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCAT