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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACCGTTGAGAATGGACCTCCACAGgtaataagcatctctatatatttaacatacattcatacatagtgcacatatgccattaacatatacccttttacgtattgtgtgtcaattgttgcttact...

Basic information

species Glycine max
transcript GLYMA02G05620.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05620.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G36160.1 (Arabidopsis thaliana), 5'ss of exon 3
GACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACCGTTGAGAATGGACCTCCACAGgtaataa-gcatctctatatatttaacatacattcatacata-gtgcacatatgccattaacatataccct-tttacgtattgtgtgtcaattgttgcttact
 || || || |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||  |||| ||  | | |||||||| |||||| |||||| |   |  |  |   ||||       | || |||| ||  | | | |  ||  || |  | ||   |  | ||  | || |   || |  |    |||| 
AACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGgtattctcgttttacctgatatcattttgaaatacatagatttgaggataattgttat-actagatgttcaatctaaattttat-cctctaccgggaattac-

upper sequence: GLYMA02G05620.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03110.t01 (Vitis vinifera), 5'ss of exon 2
GACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACCGTTGAGAATGGACCTCCACAGgtaataagcatctctatatatttaacatac-attcatacatagtgcacatatgccattaacatatacccttttacgtattgtgtgtcaattgttgcttact------
    ||||| || ||||||||  |||| || ||||| || |||||||| ||||| ||||||||||| ||||| ||| | |  ||||||||||||||||||| ||  |  | ||   | | ||| ||  |  | |||  | |  |||    |||| |      |     |||| |   |||   | | |    ||   |         
----CTCGTCTTTTACAAAGGGCGAGCGCCCAATGGGCAGAAAACTGACTGGATTATGCACGAGTACAGGCTCGAATCGGAAGAGAATGGACCTCCACAGGCAAgtataaccttcctttttttgactaattaatcaaccct--tgccatcatgcaacctctttcctgtctttcaatcattccat-ttagccattaagtgggatgttt