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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTTGGTCAAGTCATGATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGgtaggaggagcactgatgccaaccacaatttcttgtgatcttccttcatatccagcctcatgctgactgctatgtactgaactatacctatatgctggcag

Basic information

species Glycine max
transcript GLYMA02G05550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05550.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03200.t01 (Vitis vinifera), 5'ss of exon 2
CACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTTGGTCAAGTCATGATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGgtaggaggagcactgatg-ccaaccacaatttcttgtgatcttccttcatatccagcctcatgctgactgctatgtactgaactatacctatatgctggcag
|   ||||||||  || ||| ||||  | || || || ||||| ||||||||| ||||||| || | ||| ||||| |||||||||||||| || || |||||       | || ||| ||     |||  |||| |  |      |||| |  |   |||| || ||  | ||| || || ||||  |||||         
CCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTCTGGTCTAGTCATGATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaa------ctctcatgacctggagcaacatcttctagt------tcattttaaaagtcatacttacc-caatgaaccgatctatgtctatag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31471371|gb|CD413399.1|CD413399
EST:     GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAG                         ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGgtaggaggag ... atgctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: gi|51336481|gb|CO980347.1|CO980347
EST:     GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAG                         ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGgtaggaggag ... atgctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: gi|58017287|gb|CX704029.1|CX704029
EST:     GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAG                         ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGgtaggaggag ... atgctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG