Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag

Basic information

species Glycine max
transcript GLYMA02G05350.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 1
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag
|  ||||||   || ||| | || |  ||||| |||||||| |||||||| |  || || || || || || || |||||||||||||||||||||||||||| |   ||||| | |    ||| |    |||  |         |  | |     ||   |||  ||  | | |  | ||                                                  
AGGCCCAAGGAGCCCTACGTCGGCAAGTGCCTCCTCAACACCAAGATCACCGCCGACGACGCGCCCGGCGAGACATGGCACATGGTCTTCAGCACCGAGGgtctgtaactcat-catccatcctatccaatccaatccaatccaatccaatccttgat-tactcactactcaggattgcag--------------------------------------------------

upper sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctca--ttcgttttc--cctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag
|| ||||||   || ||| | || || ||||| |||||||| |||||||| || || || || || || || || ||||||||||||||||||||||| ||| || | || |  |||             |||||   |   | |||| ||  ||   ||      | | ||    |||      |  ||||||  |      || |   | |  |   ||              
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtagg-tactgaggttcaaaaaaaaatctgatttttgctgcctcgttcgttcgttcaactgctgtattcgta--tcgtatgtataaacgctgatgga-cgcacgtatgc-accgcacgcag--------------

upper sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 2
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag
||||| |||| |||||||| |||| | |||||  | ||||| |||||||| || ||||| ||||| || || ||||||||||| ||||||| |||||| |||      || | |       | | |  ||   |||||| |       ||||| | |         | || |   | || | ||| |||   |  |                                   
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaattagggggcttttgattgtattttttagag---gcatttttcgagggagagatttgatt---aggttggttgatgacttaggtgag--------------------------------

upper sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G66190.1 (Arabidopsis thaliana), 5'ss of exon 2
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag
||||| |||| |||||||| |||| | |||||  | ||||| |||||||| || ||||| ||||| || || ||||||||||| ||||||| |||||| |||      || | |       | | |  ||   |||||| |       ||||| | |         | || |   | || | ||| |||   |                                      
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaattagggggcttttgattgtattttttagag---gcatttttcgagggagagatttgatt---aggttggttgatgacttag-------------------------------------

upper sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 2
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag---------------
| ||||||||  |||||||| || | ||| || |||||||| ||||| ||||| || |||||||||||||| || ||||||||||| |||| ||| ||||||| | | ||    | |           ||     ||   |   || | ||||| | |  | |  ||| | | |  ||||| |||   ||||| | || | || |      ||||  |  |    ||| |                
AGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttctttaccatgcctatctctcttgataattgaaggatttcttttttcttttttcttttata-attttttagtag-ttgtgaataaattatgggattattcttgcatttgattgttgcgttggataatctgataaaacag

upper sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 5'ss of exon 2
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctc-cataga-ctgtaaagtagatt-gctgataaaatttg--tgtttttgagcaaatttagtgttattattgcag--------
|| || ||||  ||||||||||| ||||| || |||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||      ||  | | |  ||| | ||| |   ||      |      |     || ||   |    | || || |  |||   || ||||||      ||  |  ||||||||  | || |  |  | | |   |        
AAGCCTAAGAATCCTTACATTGGCAGATGTCTTCTCAACACTAAGATCACCGGGGATGATGCTCCTGGAGAAACATGGCACATGGTCTTCAGCACCGAGGgtaacgaccttttacatgctccatgtatatatattggaaattcaacagaaccatctttaattttatgtggaacttttgagttttttagctgatcgctcctgatttcttttgagctgaatttgattggtcaattgggttgctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796286|gb|AW781683.1|AW781683
EST:     GAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: GAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213607151|gb|DB965093.1|DB965093
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213603747|gb|DB956284.1|DB956284
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209707451|gb|BW664910.1|BW664910
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213588393|gb|DB967879.1|DB967879
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         CAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209717950|gb|BW666143.1|BW666143
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213607657|gb|DB958676.1|DB958676
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|120533254|gb|EH261387.1|EH261387
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|151401376|gb|EV271190.1|EV271190
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|12688950|gb|BG155286.1|BG155286
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGACG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209727185|gb|BW655223.1|BW655223
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213611912|gb|DB958922.1|DB958922
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|151409217|gb|EV279025.1|EV279025
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213604735|gb|DB956090.1|DB956090
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209709563|gb|BW661890.1|BW661890
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|5509655|gb|AI856213.1|AI856213
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|192317371|gb|FK007493.1|FK007493
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209726964|gb|BW675366.1|BW675366
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213594233|gb|DB966134.1|DB966134
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213597241|gb|DB962487.1|DB962487
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209709774|gb|BW668256.1|BW668256
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209705754|gb|BW661422.1|BW661422
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209714651|gb|BW671573.1|BW671573
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|20812572|gb|BQ297050.1|BQ297050
EST:     TGTGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCCGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213602157|gb|DB962650.1|DB962650
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|9258191|gb|BE346338.1|BE346338
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAATGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213589019|gb|DB973119.1|DB973119
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|15288011|gb|BI471902.1|BI471902
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|209717071|gb|BW671378.1|BW671378
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|13562564|gb|BG550784.1|BG550784
EST:     CAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: CAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|192317372|gb|FK007494.1|FK007494
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213618163|gb|DB965320.1|DB965320
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAAAATCA-TTGGG-TAATTCCAGATGG
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAA--TCAATTGGGGTAATTCCAGATGG
EST: gi|209714818|gb|BW657360.1|BW657360
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGTGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213595190|gb|DB962329.1|DB962329
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|213589650|gb|DB965838.1|DB965838
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
EST: gi|120533554|gb|EH261687.1|EH261687
EST:     TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGG                         GAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA
genomic: TGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgct ... attattgcagGAGAGATTCCTTACAGAGAAGGACAATCAATTGGGGTAATTCCAGATGGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA