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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCGGTGCTAAAACCCAGgtgtgaagtgaaaccctattctatcgatgctaaacactcctttgtgattgctactttgagtagaaaagtaaaatttaacgaatattgttgtggttagtatagggtttgaatttaatttgaggttcaggaaattgcggttgggttcaatttgtgcctgatttttttttctttgatgatttag

Basic information

species Glycine max
transcript GLYMA02G05250.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05250.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 2
TATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCGGTGCTAAAACCCAGgtgtgaagtgaaaccctattctatcgatgctaaacactcctttgtgattgctactttgagtagaaaagtaaaatttaacgaatattgttgtggttagtatagggtttgaatttaatttgaggttcaggaaattgcggttgggttcaatttgtgcctgatttttttttctttgatgatttag
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TATCGACAATTCCGAATGGATGCGAAATGGCGATTATTCTCCCACTAGATTTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGgtctcga--tgccttccgtttgattgtgaaaaaaaaaaaaaggaagaagataaaagagaagaaataaaggaaattttg-gaatatagtcgcaggagattt----ttt--------------------------------------------------------------------------