Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGGCCGAAGAAGCCATCGAAGCCATTAAATCGCTTCGAAGTAGATGTTCGGATCAAGCACAAGAATCTCTCGATAACATCCTCTTGGATCTCTACAAGgtaataggtcacttttcactttccaaatttcatgctattttatttatacaaaaacttattttgttcttgttgttgttgtactaaaacctaaacttatatcattagcgatactgaaaaaaagcactttttttaacag

Basic information

species Glycine max
transcript GLYMA02G05170.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05170.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G51280.1 (Arabidopsis thaliana), 5'ss of exon 2
TCGGGCCGAAGAAGCCATCGAAGCCATTAAATCGCTTCGAAGTAGATGTTCGGATCAAGCACAAGAATCTCTCGATAACATCCTCTTGGATCTCTACAAGgtaataggtcacttttcactttccaaatttcatgctattttatttatacaaaaacttattttgttcttgttgttgttgtactaaaacctaaacttatatcattagcgatactgaaaaaaagcactttttttaacag
 || || ||||||||||| ||||| |||||||| ||  ||  ||||||||| |||||||| || ||||||||||| || |||||||| ||||||||||||||     |||  || |   |  ||   |||| | || |||  ||| | ||         |||| |    ||| |  |||| | |||  |  | || |  |   ||                               
CCGCGCTGAAGAAGCCATTGAAGCTATTAAATCACTCAGAGTTAGATGTTCAGATCAAGCTCAGGAATCTCTCGACAATATCCTCTTAGATCTCTACAAGgtc---cgtcctttatacataaccctgtttcct-ctgtttcgtttttgca---------tttggt----ttgattctgtattgaaa--tggatttgttactgcag-------------------------------

upper sequence: GLYMA02G05170.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03740.t01 (Vitis vinifera), 5'ss of exon 2
TCGGGCCGAAGAAGCCATCGAAGCCATTAAATCGCTTCGAAGTAGATGTTCGGATCAAGCACAAGAATCTCTCGATAACATCCTCTTGGATCTCTACAAGgtaataggtcacttttcactttccaaatttcatgctattttatttatacaaaaacttattttgttcttgttgttgttgtactaaaacctaaacttatatcattagcgatactgaaaaaaagcactttttttaacag
  |||| ||||||||||| || || ||||||||| | |||||| | ||||| |||||||| ||||| ||||| ||||| |||||  ||||||| ||||||||  |  ||| ||||  |  ||||  ||  | || |  | | |   ||   ||  |||||  || ||  || ||||  |    |||    |    | |                                      
CAGGGCTGAAGAAGCCATTGAGGCTATTAAATCGTTGCGAAGTCGTTGTTCAGATCAAGCCCAAGACTCTCTTGATAATATCCTTCTGGATCTGTACAAGgtcct--gtc-ctttcgaaattccttatcacttgtttgtatctggctatttaagattattgagtactgatttttgtcttttggaaattcgattcgacag-------------------------------------

upper sequence: GLYMA02G05170.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03720.t01 (Vitis vinifera), 5'ss of exon 2
TCGGGCCGAAGAAGCCATCGAAGCCATTAAATCGCTTCGAAGTAGATGTTCGGATCAAGCACAAGAATCTCTCGATAACATCCTCTTGGATCTCTACAAGgtaataggtcacttttcactttccaaatttcatgctattttat--ttatacaaaaacttattttgttcttgttgttgttgtactaaaacctaaacttatatcattagcgatactgaaaaaaagcactttttttaacag
  |||| ||||||||||| || || ||||||||||| |||||| | ||||| |||||||| ||||| ||||| ||||| |||||  ||||||| ||||||||  |  ||| |||   |  ||||  ||  | || |  | | |   |||  ||  | |||||  || ||  || ||||  |    |||    |    | |                                      
CAGGGCTGAAGAAGCCATTGAGGCTATTAAATCGCTGCGAAGTCGTTGTTCAGATCAAGCCCAAGAGTCTCTTGATAATATCCTTCTGGATCTGTACAAGgtcct--gtc-cttgcgaaattccttatcacttgtttgtatctggctatttaagga-ttattgagtactgatttttgtcttttggaaattcgattcgacag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208131773|gb|GD932562.1|GD932562
EST:     CGGATCAAGCACAAGAATCTCTCGATAACATCCTCTTGGATCTCTACAAG                         AGATGTGGGAGACTTGATGATCAAATTGGTCTACTGAAGCACATGTTGTAC
genomic: CGGATCAAGCACAAGAATCTCTCGATAACATCCTCTTGGATCTCTACAAGgtaataggtc ... tttttaacagAGATGTGGGAGACTTGATGATCAAATTGGTCTACTGAAGCACAAGTTGTAC
EST: gi|193563127|gb|FK520302.1|FK520302
EST:     TAACATCCTCTTGGATCTCTACAAG                         AGATGTGGGAGACTTGATGATCAAATTGGTCTACTGAAGCACAAGTTGTAC
genomic: TAACATCCTCTTGGATCTCTACAAGgtaataggtc ... tttttaacagAGATGTGGGAGACTTGATGATCAAATTGGTCTACTGAAGCACAAGTTGTAC