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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtattgttgttattttttctttgtccattctgggatgttgagttctttttagatttttattattctattatgtggaatag

Basic information

species Glycine max
transcript GLYMA02G05160.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05160.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 3
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtattgttgttat--------tttttctttgtccattctgggatgttgagttct----ttttagatttttattattctattatgtggaatag
|||||||| || ||||||||||| || || ||||||||||||||||| |||||||||||||| ||||| ||  ||||||| || || |||| ||     ||        | || ||| ||     | |      || | | |    | | | | |||| || |  | || |    |    
GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacag---

upper sequence: GLYMA02G05160.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 2
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtattgttgttattttttctttgtccattctgggatgttgagttcttttta-------gatttttattattctattatgtggaatag
|||||||| || ||||||||||| || || || |||||||||||||| ||||||||||| || ||||| ||||| ||||| ||||| |||| ||   | ||  |    ||    || || ||     ||| | |  ||        | |    |||||  | ||   |     ||
GATTATGTTCCGACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACGGTGAATCTTGGATTGTGGGATACTGCAGgtaatga-atgatgatccaattcataatccttggtgagagagctttccttgatgaatcggtcgaaattatgtttttggtttatgcag

upper sequence: GLYMA02G05160.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgta---ttgttgttattt-tttctttgtccattctgggatgttgagttctttttagatt--tttattattcta--------ttatgtggaatag
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || || || ||||| ||||| ||||   |    || | || |||| || |   || |    |  | |      ||| ||||  |||||   |||          | | ||||| ||
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag