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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGgtgagttagtcacttggttttcattttcaagaccttgtcaaatatgggatatagaaattgctacacaattgctgagttcttgagagttataagattaggc...

Basic information

species Glycine max
transcript GLYMA02G05000.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05000.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G35840.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGgtgagttagtcacttggttttcattttcaagaccttgtcaaatatgggatatagaaattgctacacaattgctgagttcttgagagttataagattaggc
 || ||||| || ||||||||||| || || ||||| ||||| || || |||||||||||||||||| | || ||  |  |||| ||| || | ||||||||||| |     |||  |||  | |    |     | |    | |   | ||   | | |    ||   | ||   ||||||  | |  |    |     
TGGAGCCATTTCGGGAGCTGTTTTCTCTATCGAAGTCTTTGAGTCATCTCTTGTTCTTTGGAAATCTAATGAGTCACGTTTTGGATGTCTCCTCTACTTGgtgagctgagatcttcatttgaactactcatctgctctgtttttttccagatttgattcga---actgattcttgtttcttgttaatctttgtgtag---

upper sequence: GLYMA02G05000.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0264g00020.t01 (Vitis vinifera), 5'ss of exon 2
AGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGgtgagttagtcacttggttttcattttcaagaccttgtcaaatatgggatatagaaattgctacacaattgctgagttcttgagagttataagattaggc-----
 || || ||||||||||||||||| || ||||| || ||||||||||| |||||||| ||| ||||||| || || || ||||| ||| |  | ||| |||||||  | |    |  ||  |   || |  |  |  |  ||| |  |    | || ||| |    ||||  ||   ||| |   |  | | ||  ||       
TGGAGCAATATCAGGAGCTGTTTTCTCTATTGAGGTCTTTGAATCTTCTCTTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatttggcttcttgccccattgatcatatgctttaatgttagg-ggataagttggtg---aatta-tggactctgggtgggaaaaggaagagaaatata