1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttttcagtgttgagtgatgagtgttaacttcaacactgtatagtgcaggattattgtgttagtttggctaacatagtgtgtttatatatatatgcatgcag
species | Glycine max |
transcript | GLYMA02G03740.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCCEST: gi|193528470|gb|FK486772.1|FK486772
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: AGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCACCEST: gi|192306018|gb|FG993636.1|FG993636
genomic: AGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCCEST: gi|9564215|gb|BE473724.1|BE473724
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCCEST: gi|209709438|gb|BW668366.1|BW668366
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCACCEST: gi|151396617|gb|EV266494.1|EV266494
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
EST: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTG GATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
genomic: TGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttt ... atgcatgcagGATATTGGTGTGGGAAGATGGTTTCTGCAATTTTGCTGCCTCAGCAGCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttttcagtgttgagtgatgagtgttaacttcaacactgtatagtgcaggattattgtgttagtttggctaacatagtgtgtttatatatatatgcatgcag
- - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - AAGGAA