Sequence
atgc intronic sequence ATGC exonic sequenceATTTGCAACGCCTTATAGGATTACATGGGATTACTATTTCTCTGCGCGAGAACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATATgtattttcccttttctttatttgttgttttctgttctgttttaatcttttttttttaatgtgaagtagcaactacagaaaggtaatattctcactaaattatcag
Basic information
species | Glycine max |
transcript | GLYMA02G03160.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os09g22440.1 (Oryza sativa), 5'ss of exon 2
ATTTGCAACGCCTTATAGGATTACATGGGATTACTATTTCTCTGCGCGAGAACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATATgtattttcccttttctttatttgttgttttctgttctgttttaatcttttttttttaatgtgaagtagcaactacagaaaggtaatattctcactaaattatcag
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GTTTGCAACACCATATAGGATAACATGGGATTACTATTTTGCTGCTCGAGAACACACTTTGGAGATTAAATCATGGGAAGAAGAAGCGGAACTGGAATATgtgtgttttcttcccaaagttt----ctttccctcctttttttaccatgcaatatct-tatcaaat--taatcttaatgatacaatctttcgtgtttgtgatcag
upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTTGCAACGCCTTATAGGATTACATGGGATTACTATTTCTCTGCGCGAGAACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATATgtattttcccttttctttatttgttgttttctgttctgttttaatcttttttttttaatgtgaagtagcaactacagaaaggtaatattctcactaaattatcag
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GTTTGCAACGCCATACAGGATCACTTGGGACTACTATTTCTCTGCTAGAGATCATACTTTGAACTTTGATTCTTGGGAAGAGAAAGCTGAATTGGAATATgtaggtttttgatttagttaatcttctttatagtcttaagagggtttgtggtgtttgttttcatggtgatttcttcgatgagtag--------------------
upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 2
ATTTGCAACGCCTTATAGGATTACATGGGATTACTATTTCTCTGCGCGAGAACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATATgtattttcccttttctttatttgttgttttctgttctgttttaatcttttttttttaatgtgaagtagcaactacagaaaggtaatattctcactaaattatcag---
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TTTTGCAACACCATATCGTGTTACGTGGGACTACTACTTTTCTGCTCGAGAGCATAAATTAGAAATTGAATCATGGGAAGAACCTGCAGAATTGGAATATgtatg---------cttgagttattgtttt--gttttgtttgggcctttctttt-------gacaactccatcatataagagtgaaactctcactgaccattgagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10847300|gb|BF070005.1|BF070005EST: AACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATAT GTAAAGCGGCATGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGA
genomic: AACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATATgtattttccc ... aaattatcagGTAAAGCGGCATGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTGCAACGCCTTATAGGATTACATGGGATTACTATTTCTCTGCGCGAGAACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATATgtattttcccttttctttatttgttgttttctgttctgttttaatcttttttttttaatgtgaagtagcaactacagaaaggtaatattctcactaaattatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG