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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaatgtctagttttgttattactttaccgcaagctttatgcttttttgcagacccttaatttgttgtttgtatgattttgagtttccatgcag

Basic information

species Glycine max
transcript GLYMA02G02600.5
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02600.5 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g09120.2 (Oryza sativa), 5'ss of exon 2
GGAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaatgtctagtt---ttgttattactttaccgcaagctttatgct-----tttttgcagacccttaatttgttgtttgtatgattttgagt--ttccatgcag-------------
|   | |||| ||  | ||||| |       |  || | |        | ||  | || || | | |||||||||||||||||||||||||||||||||||||||||||| | |   |||  ||   ||||| ||  |||  || |    |  || |     |   |  |  |  || |||   | ||| | | |||  |||   ||  ||   |             
GTCTAGTGGTCTGCGGGAAGAGATGTGATTCTGTTGGCATCCCAGCACTCAGTTCTTCATTAAATCTTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatttgcataatctgtttgtattgttgttgttttgacgtatatctcgtgttcaaaataaatatatgcatttcattccctctttat-taattgagagcagttttattttgaaatgattcacag

upper sequence: GLYMA02G02600.5 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G176506_T07 (Zea mays), 5'ss of exon 2
-------------------------GGAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaa----atgtcta--gttttgttattactttaccgcaagctttatgctt-ttttgcagacccttaatttgttgtttgtatgattttgagtttccatgcag--------------------
                         |   | ||||  | || ||||| |    |     || | |        | ||  | || || |   | ||||| |||||||||||||| ||||||||||||||||||||| | |     |||| |   ||||||| |    ||  | |  |  ||||  || | ||| | ||  |  || |    ||  |  |   || | | |  |                         
CTGAACAGCTACAGCAAGCTAACTGGTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGgtagaatcaaacagagctttgtattgtgagttatttgcatattttgtccattattttgttgtctacttgtctc--gtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag

upper sequence: GLYMA02G02600.5 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 2
GGAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaa----tgtcta--gttttgttattactttaccgcaagctttatgctt-ttttgcagacccttaatttgttgtttgtatgattttgagtttccatgcag--------------------
|   | ||||  | || ||||| |    |     || | |        | ||  | || || |   | ||||| |||||||||||||| ||||||||||||||||||||| | |     |||| |   ||||||| |    ||  | |  |  ||||  || | ||| | ||  |  || |    ||  |  |   || | | |  |                         
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgcatattttgtccattattttgttgtctacttgtctc--gtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag

upper sequence: GLYMA02G02600.5 (Glycine max), 5'ss of exon 2
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 5'ss of exon 2
GGAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagt-tattggaaatgtctagttttgttattactttaccgcaagctttatgcttttttgcagacccttaatttgttgtttgtatgattttgagtttccatgcag
| ||||| || ||  ||||| ||| | || | |  |  || | |  | ||||| | || ||  |||||||||| ||||||||||||||||| || |||||||||||  |||   | | | |  || ||||||    |||| |   |||  |     |||||       || |    |||||    | | ||||             
GTAGATTAGTCTGCGGAAAGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGCTCGTCGTTAGTTATTTCTCTCGGTAGAATCAAACAAAGTTTCGTATTgtgagtacatt---atttttttattgtgttatggagttacagtctgctacaatagattttga----tattgac--attgttctcgtaactttgcag----------

upper sequence: GLYMA02G02600.5 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0026g01590.t01 (Vitis vinifera), 5'ss of exon 3
GGAGATTGGTGTGTAGAAAGAGGTCCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttattggaaatgtctagttttgttattactttaccgcaagctttatgcttttttgcagacccttaatttgttgtttgtatg-attttg-agtttccatgcag-----------
| | |||||| ||   |||||| | || | |  |||   | || ||  |  |  | ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||  || |  |||  ||| || |  | |    |  |   |  ||    |||| |||   ||||| | ||     |||| ||     |   |  |||              
GCAAATTGGTCTGCGAAAAGAGATGCACCTTATCTGGAATTGGCCTCCTTGGTGCTTCCTTAATTATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagtttttacaa-ttcctaaatttcttttaccatagatgtcaatatagtg----tttgaagatggttaatgtcttcgccttatgcatcccacaacatatatgtgttgctcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193549059|gb|FK505410.1|FK505410
EST:     AGCACATCCTTGATTATTTCTCTTGGTAGTATCAAACAAAGCTTTGTATT                         AACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTT
genomic: AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatt ... ttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTT
EST: gi|207748852|gb|GD719485.1|GD719485
EST:     AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATT                         AACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTG
genomic: AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatt ... ttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTG
EST: gi|15204535|gb|BI427303.1|BI427303
EST:     AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATT                         AATTAATCCGCATTTACCAGACATGCCTATTGTTTAT
genomic: AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatt ... ttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTAT
EST: gi|208098763|gb|GD891418.1|GD891418
EST:     AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATT                         AACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTT
genomic: AGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatt ... ttccatgcagAACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTT