Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCTGTTGCAGATGATCTGAACTCTTCACATTCAACACCCTGTGAATGGTTTGTCTGTGATAATGACCAGAGTGGTACAAGATTTTTTGTTATTCAGgtagggagaattaattgagggcatgttattgctttgtgcactataattgtacttgtaagtttgctgtgatttgcgagaatttgtgagcttatatatgata...

Basic information

species Glycine max
transcript GLYMA02G01720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01720.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g15000.1 (Oryza sativa), 5'ss of exon 2
GCAAGCTGTTGCAGATGATCTGAACTCTTCACATTCAACACCCTGTGAATGGTTTGTCTGTGATAATGACCAGAGTGGTACAAGATTTTTTGTTATTCAGgtagggagaattaattgagggcatgttattgctt-tgtgcactataattgtacttgtaagtttgctgtgatttgcgagaatttgtgagcttatatatgata
 ||||||||||||||||||||||||||||||   ||    || || ||||||||  | |||||| |||| ||  |  | |||||||  |||||  |||||||| |      |  |       || | ||   |  |||    |  | ||   || ||   | | |    ||||   |   ||  |  ||            
ACAAGCTGTTGCAGATGATCTGAACTCTTCAAGATCTTGTCCTTGCGAATGGTTCATTTGTGATGATGATCAAGGCAGCACAAGATACTTTGTGGTTCAGgtatgt----cttctgcccaatatatcatgattcgtgtaattttcactttccctggttcatcttcatcaattttttattgttaattggcag----------