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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAGgtaaagaatgttctaggtttaataacaatgttttcaaggttccatagtttctaaaaatttcgtcattggcctatattgacagggtagattagaaagaaaaattaatatttgaagtatttatttaaccatgctaacttctactcatgctattactgatactttttgaatatctgcag

Basic information

species Glycine max
transcript GLYMA02G00930.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298163495|gb|HO012228.1|HO012228
EST:     TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAG                         GGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
genomic: TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAGgtaaagaatg ... atatctgcagGGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
EST: gi|19935747|gb|BQ080568.1|BQ080568
EST:     TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAG                         GGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
genomic: TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAGgtaaagaatg ... atatctgcagGGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
EST: gi|208060810|gb|GD858720.1|GD858720
EST:     TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAG                         GGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
genomic: TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAGgtaaagaatg ... atatctgcagGGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
EST: gi|19935590|gb|BQ080504.1|BQ080504
EST:     TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAG                         GGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
genomic: TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAGgtaaagaatg ... atatctgcagGGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
EST: gi|10843959|gb|BF070872.1|BF070872
EST:     GCAGATAGTTGGCTAATTCATTTGGAG                         GGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
genomic: GCAGATAGTTGGCTAATTCATTTGGAGgtaaagaatg ... atatctgcagGGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
EST: gi|213611754|gb|DB960654.1|DB960654
EST:     TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAG                         GGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
genomic: TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAGgtaaagaatg ... atatctgcagGGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAAAATACT
EST: gi|207689069|gb|GD673422.1|GD673422
EST:     TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAG                         GGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAA
genomic: TGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAGgtaaagaatg ... atatctgcagGGAGGAGGATGGTGTAATACCATCAGAAACTGTGTCTATAGAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGTTTGGATGGAACGGTGCCTGGATACCATTTGGATCGTGGATTTGGATCTGGTGCAGATAGTTGGCTAATTCATTTGGAGgtaaagaatgttctaggtttaataacaatgttttcaaggttccatagtttctaaaaatttcgtcattggcctatattgacagggtagattagaaagaaaaattaatatttgaagtatttatttaaccatgctaacttctactcatgctattactgatactttttgaatatctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG