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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttacttttatatcacatatcatgttcatcgcttggactgtttaactttaattttcttttcttgtttagaatttcatccaatagtctttttaa...

Basic information

species Glycine max
transcript GLYMA01G45700.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g39280.1 (Oryza sativa), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttacttttatatcacatatcatgttcatcgcttggactgtttaacttta--attttcttttcttgtttagaatttcatccaatagtctttttaa--------
 || ||  | ||||||||  | |||||||| || || ||||| | ||| ||||| ||||||||| |||| ||||||||||||||||| || ||||| || |||| || |   |  ||  |  |  ||        | || |||| |||||   | |    | || |  |||||| | |       | | | |  || |  ||        
CGTCCCGCTCTGGGAGCTCGTCTGGTTCTCCCTCGTCGCCAACACGTCCATCACCGGGATGAACCTTAGTCTCATGCTCAACTCCGTCGGTTTCTATCAGgtattgtatatttactaggttgcccat--------ttgcctggaatgtttgtatatgccgtcttgtgctcttgtgtggctgaaggtgcga-aacctctgcaaacctgtag

upper sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 2
lower sequence: AC194970.5_FGT005 (Zea mays), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttactttta-tatcaca-tatcatgttcatcgcttggactgtttaactttaattttcttttcttgtttagaatttcatccaatagtctttttaa
 || ||  | ||||||||  | |||||||| || || ||||| |  || ||||| ||||||||| | |||||||||||||||||||| ||||||||||| ||| |  ||| ||   | | | ||| || || |   | |||  || |  | ||  ||  |  |   || ||| | |     |  |    | | |||      
CGTCCCGCTCTGGGAGCTCGTCTGGTTCTCGCTCGTCGCCAACACCTCCATCACCGGGATGAACCTCAGCCTCATGCTCAACTCCGTCGGATTCTACCAGgtacgcctttgctccgagtctgacagtaccaggccta-cgcc-gggccatcta-tttggacctgggttgcttctgtgtggctcaagttgagaatctgcag--

upper sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G055216_T01 (Zea mays), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatg---gttttacttttatatcaca-tatcatgttcatcgcttggactgtttaactttaattttcttttcttgtttagaatttcatccaa---tagtctttttaa-
 || ||  | ||||||||  | |||||||| || || ||||| |  || ||||| ||||||||| | |||||||||||||||||||| || |||||||| ||| |       | || |  | | |||    ||    || ||| |   | |   |  ||     |   || ||||| |          |  |   | |     |  | 
CGTCCCGCTCTGGGAGCTCGTCTGGTTCTCTCTCGTCGCCAACACCTCCATCACCGGGATGAACCTCAGCCTCATGCTCAACTCCGTCGGCTTCTACCAGgtacgtacaccctgctctgctctgacagcgccagcggcagcgcctacgccggccattttcggcctgggttgcttgtgtgcgcgcgtggctgaagctgggaacctgcag

upper sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G42420.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgta---tggttttacttttatatca--catatcatgttca-tcgcttggact-gtttaactttaattttcttttcttgtttag---aatttcatccaatagtctttttaa-
||| ||||||||||||||||||||||||||  | || || ||| | |||||  | |  |||||||| || ||||||||||| |||||||| ||||||||||||       |  |  |  || |    |||||    |  | | |||| || | |   |  | ||   ||   || | ||||||   | |  |||    | || ||  | | 
TGTACCTATGTGGGAGCTTATTTGGTTCTCCATTGTCGCTAATGTCTCTATTGCTGCTATGAACTTCAGTCTCATGCTCAATTCCGTTGGCTTCTACCAAgtaattcatctcgatctcgatcttgagcatatagaatcaaattgctttgatttgagcatatatagactttgattttggtttagtggattcacatttttttgtgttgattag

upper sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G76670.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttacttttatatcacatatcatgttcat-cgcttggactgtt-taactttaattttcttttcttgtttagaatttcatccaatagtctttttaa
||||||| | ||||||||| | ||||||||| | ||||| ||||| |||||| | |  ||||||||||| || ||||||||||| ||||| ||||| || |||    ||  |||  | ||    | |   | | || || ||| |   || |   ||| |||||  ||  |  |||  | |||                   
TGTTCCTCTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCTATCGCTGCTATGAACTTTAGTCTTATGCTCAACTCTGTTGGCTTCTATCAGgta--acttgtcttggagatttgctctttcggttattcgattgaaagattgttgttttgattttgcttattcattttcactttag-----------------

upper sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G21070.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttacttttatatcacatatcat--gttcatcgcttggactgtttaactttaattttctttt--cttgtttagaatttcatc-caatagtctttttaa
||||||| | ||||||||| ||||||||||||| ||||| ||||| || ||| | |  ||||| ||||| || ||| | ||||| ||||| |||||||| |||  | ||  |||| || |  ||| |      ||  ||  ||   || |||||  |   | ||||  |        | |  ||| ||  ||||||         
TGTTCCTCTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTAGTCTTATGTTGAACTCTGTTGGCTTCTACCAGgtaaagcttctctttgattttgcattttcccaatttctcaatttagct-tttaagatggttcttctgatagtccacattgtgtttgatttcaatag---------

upper sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G42420.2 (Arabidopsis thaliana), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttacttttatatcacatatcatgttcatcgc-ttggactgtttaactttaattttcttt---tcttgtttagaatttcatccaatagtctttttaa
||| ||||||||||||||||||||||||||  | || || ||| | |||||  | |  |||||||| || ||||||||||| |||||||| ||||||||||||    || |  |  || ||  || |   |   || |  |   | || ||   ||| |   | | |     ||| ||    |||  |  | |    |||||  
TGTACCTATGTGGGAGCTTATTTGGTTCTCCATTGTCGCTAATGTCTCTATTGCTGCTATGAACTTCAGTCTCATGCTCAATTCCGTTGGCTTCTACCAAgta---attcatctcgatctcg-atcttgagcatatagaatcaaattgctttgatttgagcatatatagactttgattttggtttagtggattcacattttttt

upper sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0122g00090.t01 (Vitis vinifera), 5'ss of exon 2
TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttacttttatatcacat-atcatgttcatcgcttggactgtttaactttaattttcttttcttgtttagaatttcatccaatagtctttttaa
||||||| ||||||||||| | ||||||||| | || ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||| |  || |||   |     |||    | || | |   |     | ||||||  ||| |||   | | | | || |     ||   ||   ||  ||  
TGTTCCTTTGTGGGAGCTTCTCTGGTTCTCAATTGTAGCCAATATGTCTATCACAGGGATGAACTTGAGCCTCATGCTAAACTCAGTTGGATTCTATCAAgtaagaatt-actaaaacgcttcattggtacgtacttatgtaattttttttaacggtaaatttgagtacctttataaacgggtatgatattaactaatttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7326713|gb|AW620511.1|AW620511
EST:     TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAA                         ATATCAAAACTGAGCATGATTCCAGTGGTTTGTGTGATGGAATGGATACTT
genomic: TCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggtttt ... atggtcacagATATCAAAACTGAGCATGATTCCAGTGGTTTGTGTGATGGAATGGATACTT