Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCATGTACAACGCCGAGAAACGGGGGAAGCGCCAAGTCATGATTAGGCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctcaacacctctatttttgttcccccctaattgaattgaatataatagataataggaacttgtttcagtgttgttgtcatgatttgtgatggtgtggtgctttgtag

Basic information

species Glycine max
transcript GLYMA01G45060.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G45060.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G059624_T01 (Zea mays), 5'ss of exon 1
AAGAGCATGTACAACGCCGAGAAACGGGGGAAGCGCCAAGTCATGATTAGGCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctcaacacctctatttttgttcccccctaattgaattgaatataatagataataggaacttgtttcagtgttgttgtcatgatttgtgatggtgtggtgctttgtag--
||||||||||| || | |||||| || || ||| | ||||| ||||||||||| || || ||||| || ||||| ||||| |||| ||||||||||||||||     |    | || |||||   ||         |||  |  ||  |  | ||    ||||| | |||         || |||||| | ||||   ||| |  |||| ||   
AAGAGCATGTATAATGTCGAGAAGCGTGGCAAGAGGCAAGTGATGATTAGGCCATCTTCAAAGGTGATCATAAAGTTCCTTTTGGCGATGCAGAAGCATGgt-----tagttatctttatttacatt---------ttgtttgcaacttgttggaagcaaggaaatagttctca----attctcatgagtcgtga--atgttgccctttctacag

upper sequence: GLYMA01G45060.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g00530.t01 (Vitis vinifera), 5'ss of exon 3
AAGAGCATGTACAACGCCGAGAAACGGGGGAAGCGCCAAGTCATGATTAGGCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctcaacacctct--atttttg------------ttcccccctaattgaattgaatataatagataataggaacttgttt-cagtgttgttgtcatgatttg-tgatggtgtggtgctttgtag
|||||||||||||| || ||||| || |||||||| || || ||||| || || ||||| || || ||  | ||||| ||| |||| |||||||||||||||| |  ||||  | | |  ||||  |            |||    ||  || | ||    ||  |   |  | |  || ||| | || | || ||  | |  |||  ||||  | |  |||| |  ||
AAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCAGACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773918|gb|BG238845.1|BG238845
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|4306745|gb|AI443948.1|AI443948
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193399833|gb|FK369980.1|FK369980
EST:     CCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGAATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAG
genomic: CCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGA-TGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAG
EST: gi|208041093|gb|GD842592.1|GD842592
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193686376|gb|FK626385.1|FK626385
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTTAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|7233861|gb|AW569204.1|AW569204
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|208261415|gb|GE060857.1|GE060857
EST:     CTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: CTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|208066195|gb|GD863992.1|GD863992
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|192330019|gb|FK020835.1|FK020835
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|208258477|gb|GE056338.1|GE056338
EST:     AGGTCATAATAAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCA
genomic: AGGTCATAAT-AAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCA
EST: gi|6846271|gb|AW348561.1|AW348561
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193399891|gb|FK370038.1|FK370038
EST:     CCGTCCT-GAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: CCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|213591764|gb|DB973371.1|DB973371
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|192334186|gb|FK026567.1|FK026567
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193530692|gb|FK484945.1|FK484945
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|209726482|gb|BW662834.1|BW662834
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|208095806|gb|GD894566.1|GD894566
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|192298113|gb|FG991393.1|FG991393
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193599823|gb|FK551590.1|FK551590
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193543311|gb|FK500614.1|FK500614
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|208030648|gb|GD831150.1|GD831150
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATC
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATC
EST: gi|209726497|gb|BW662835.1|BW662835
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|31469585|gb|CD411613.1|CD411613
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|213597346|gb|DB977765.1|DB977765
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|7686423|gb|AW757071.1|AW757071
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|192334185|gb|FK026566.1|FK026566
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193549445|gb|FK508820.1|FK508820
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|208319409|gb|GE115936.1|GE115936
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193522083|gb|FK478162.1|FK478162
EST:     CGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAAGACATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATC
genomic: CGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAG-AAG-CATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATC
EST: gi|208147281|gb|GD944948.1|GD944948
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193398449|gb|FK362089.1|FK362089
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|208333300|gb|GE132785.1|GE132785
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193431083|gb|FK396801.1|FK396801
EST:     CCGTCCTCGAAGGTCATAATAAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: CCGTCCTCGAAGGTCATAAT-AAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|213587877|gb|DB959701.1|DB959701
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193313411|gb|FK278694.1|FK278694
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193528780|gb|FK483568.1|FK483568
EST:     AGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: AGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|207778504|gb|GD749333.1|GD749333
EST:     CCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: CCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|4292212|gb|AI437730.1|AI437730
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|151408384|gb|EV278192.1|EV278192
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193594084|gb|FK548118.1|FK548118
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|207683946|gb|GD667433.1|GD667433
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193420897|gb|FK387502.1|FK387502
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|208116878|gb|GD918604.1|GD918604
EST:     GATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193413131|gb|FK380866.1|FK380866
EST:     GTCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
EST: gi|193341343|gb|FK308361.1|FK308361
EST:     GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATG                         GGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG
genomic: GCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctca ... tgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAGCATGTACAACGCCGAGAAACGGGGGAAGCGCCAAGTCATGATTAGGCCGTCCTCGAAGGTCATAATAAAATTCCTCTTGGTGATGCAGAAGCATGgtatttctcaacacctctatttttgttcccccctaattgaattgaatataatagataataggaacttgtttcagtgttgttgtcatgatttgtgatggtgtggtgctttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC