1 5' 3' | 2 5' 3' | 3 5' 3' |
GACCATGTTCAAGCTTGGAAACCCATTGTCGATGCCGTCCACGCCAAAGGCGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctttttctttattcccctcaactcctcctttagacttgttttttctttatattattaactcaactttcaatttttaacacgtttcagtagaaa...
species | Glycine max |
transcript | GLYMA01G44600.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGGAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|6724334|gb|AW308733.1|AW308733
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|19937188|gb|BQ081188.1|BQ081188
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGCTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|21637821|gb|BM107976.1|BM107976
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAARAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|13480608|gb|BG509951.1|BG509951
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: GGGGGTTTTCTTCTGTCAAATTTGGCACGTGGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|298197029|gb|HO041716.1|HO041716
genomic: GGTG-TTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|192297056|gb|FG990327.1|FG990327
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|254345565|gb|GR851727.1|GR851727
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|13479195|gb|BG508538.1|BG508538
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|7588905|gb|AW704690.1|AW704690
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|13562349|gb|BG550569.1|BG550569
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTAACAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|192295796|gb|FG990862.1|FG990862
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|33388659|gb|CA851866.1|CA851866
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|298196403|gb|HO041146.1|HO041146
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|15814078|gb|BI786353.1|BI786353
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|33390375|gb|CA853570.1|CA853570
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|4396863|gb|AI495860.1|AI495860
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|7926222|gb|AW832248.1|AW832248
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|8284685|gb|BE022227.1|BE022227
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|19935988|gb|BQ080671.1|BQ080671
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|7638963|gb|AW733295.1|AW733295
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|8282576|gb|BE020137.1|BE020137
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|15815611|gb|BI787886.1|BI787886
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|192322649|gb|FK014986.1|FK014986
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|192324298|gb|FK018274.1|FK018274
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCGG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|14991432|gb|BI317105.1|BI317105
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|14989963|gb|BI315636.1|BI315636
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|18732748|gb|BM527225.1|BM527225
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|15000796|gb|BI321610.1|BI321610
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|7639562|gb|AW733882.1|AW733882
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCA-ATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|17400292|gb|BM177074.1|BM177074
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|15815436|gb|BI787711.1|BI787711
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCAEST: gi|19936789|gb|BQ081013.1|BQ081013
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
EST: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAG TTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
genomic: CGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctt ... ttttgtacagTTTATCAGCCAAATGGACAAGCACCCATATCTTCTACGGACAAGCCACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCATGTTCAAGCTTGGAAACCCATTGTCGATGCCGTCCACGCCAAAGGCGGTGTTTTCTTCTGTCAGATTTGGCACGTTGGAAGAGTTTCAGATTCAGgtcttttctttttctttattcccctcaactcctcctttagacttgttttttctttatattattaactcaactttcaatttttaacacgtttcagtagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc