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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTGCGGGTTCAATTAAATGGTCAACCATCTTCAGACTTTGAACATGAAGTAGAACGACAACCCATTCCCCAACATGTAATGACTAGCACAAGCGAGgtgacttgatcaagactctaaaatttgagttctctggtatttgtttgatctcttagcatcatagaggttaattgattttgctgcttgcag

Basic information

species Glycine max
transcript GLYMA01G43650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43650.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 2
GGTTTTGCGGGTTCAATTAAATGGTCAACCATCTTCAGACTTTGAACATGAAGTAGAACGACAACCCATTCCCCAACATGTAATGACTAGCACAAGCGAGgtgacttgatcaaga-ctctaaaatttgagttctctggtatttgtttgatctcttagcatcat--agaggttaattgattttgctgcttgcag
||| |||| | ||||  ||   ||| || | || |||    ||  |  ||| |||||||| ||||||||||| ||| || ||||||| ||||||||||||||  | |  |    | |||  || ||    ||  |    |     |||   | || | || ||  | |   | || | || |  |||||||||
GGTCTTGCAGATTCAGCTAGGAGGTAAAACGTCCTCAATTCTTTCATGTGATGTAGAACGCCAACCCATTCCACAAGATTTAATGACCAGCACAAGCGAGgttgcctattttgtagctcacaagttcttctttgccttcaaaatcttgccatattcggataattcaaaaaatgat-gtttcttttgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283479|gb|AW596086.1|AW596086
EST:     AAGTAGAACGACAACCCATTCCCCAACATGTAATGACTAGCACAAGCGAG                         GATCTCTTTGATTTTATTGCGTCTTCATTGAAGGAATTCATTGCTAAAGAA
genomic: AAGTAGAACGACAACCCATTCCCCAACATGTAATGACTAGCACAAGCGAGgtgacttgat ... ctgcttgcagGATCTCTTTGATTTTATTGCGTCTTCATTGAAGGAATTCATTGCTAAAGAA
EST: gi|23061491|gb|BU578462.1|BU578462
EST:     AAGTAGAACGACAACCCTTTCCCCAACATGTAATGACTAGCACAAGCGAG                         GATCTCTTTGATTTTATTGCGTCTTCATTGAAGGAATTCATTGCTAAAGAA
genomic: AAGTAGAACGACAACCCATTCCCCAACATGTAATGACTAGCACAAGCGAGgtgacttgat ... ctgcttgcagGATCTCTTTGATTTTATTGCGTCTTCATTGAAGGAATTCATTGCTAAAGAA