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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctcatttaccgattaagtcttgtgttctggaaattttcttgacattgcttaatcatttttggcttttaactgacttgaatgctcttttgtttcttttttctgcatag

Basic information

species Glycine max
transcript GLYMA01G43470.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43470.5 (Glycine max), 5'ss of exon 2
lower sequence: AT4G23850.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctcatttaccgattaagtcttgtgttctggaaattttcttgacattgcttaatcatttttggcttttaactgacttgaatgctcttttgtttcttttttctgcatag
  ||||||||||||| ||||||   ||||||||||| || ||||| || ||||| ||||| ||||||  ||  |  ||    ||| | | |  | || ||   |||||| |  |||    | || |  ||    | |||      |||| || ||||                     
CATGTCTGTTGAGAAGTATCCAAACAATCCAATGCTGGGACGCCGCGAGATTGTAGATGGAAAGgtgttgttactgtttgttattgattttgattttgtg---attttcgtttcatgttattataaaattcacttgttat----tttgattgttcttag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596837|gb|DB964100.1|DB964100
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|208183242|gb|GD981464.1|GD981464
EST:     AATATCCATCAAATCCAATACTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|209718138|gb|BW657797.1|BW657797
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|213593798|gb|DB957918.1|DB957918
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|213603942|gb|DB964962.1|DB964962
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|209713723|gb|BW681863.1|BW681863
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|193373262|gb|FK336142.1|FK336142
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|213617043|gb|DB961523.1|DB961523
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|209712293|gb|BW668487.1|BW668487
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|209718875|gb|BW669062.1|BW669062
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
EST: gi|16996081|gb|BM085453.1|BM085453
EST:     AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAG                         CCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG
genomic: AATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGgtgaagtctc ... ttctgcatagCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATG