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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagttaacattgtctcctcttgtgctttacggttgtgtttaaattgtaacgtgtgtttgattcag

Basic information

species Glycine max
transcript GLYMA01G43110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43110.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgtta-----gttaacattgtctcctcttgtgct--ttac------ggttgtgtttaaattgtaacgtgtgtttgattcag----------------
||||| ||| |||||||||| || ||||||||||| |||||||||||||||  | |      | |  | |||  |  | | |  ||  ||||      | ||| ||  | |    |  | ||| ||| || |                 
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcactctgctctccttgattggtttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg

upper sequence: GLYMA01G43110.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagttaacattgtctcctcttgtgctttacggttgtgtttaaattgtaacgt-------gtgtttgattcag-------------------------
||||| ||  |||||||||| || ||||||||||| |||||||||||||||| ||  |||  | | ||| |   |||  | |     | ||  |  |   |||  |         |||||  |  ||                         
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagt-ggtt--cttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg

upper sequence: GLYMA01G43110.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G459828_T01 (Zea mays), 5'ss of exon 2
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgt-----ccgttag-ttaacattgtctcctcttgtgctttacggttgtgtt------taaattgtaacgtgtgtttgattcag---
||||| ||| |||||||||| || ||||||||||| ||||||||| | |||     ||  |||  |  || |       | || |||    |||||| |       ||    || ||   | ||  | | |    
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAgtacctcttcaagggtatggtccactagactcgcagtagggtaacctgggctgattggttgtttcgccttctaggaggtgacagatcttcaaattatttt

upper sequence: GLYMA01G43110.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G050925_T01 (Zea mays), 5'ss of exon 2
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagttaacattgtctcctcttgtgctttacgg--ttgtgtt--taaattgtaacgtgtgtttgattcag-------------------------
||||| ||| |||||||||| || ||||||||||| ||||||||| | |||  |  | |   | |   ||   || |   |        ||| |||  |   ||||  ||  |  | |     |                         
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGgtatgcgattattcgtccgctaaactcgcagtagggtaacttgcgttggttggttgtttcgctttctaggaggggacgtcttcaaactgtttccttatta

upper sequence: GLYMA01G43110.1 (Glycine max), 5'ss of exon 2
lower sequence: AC209215.4_FGT006 (Zea mays), 5'ss of exon 2
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGg-----tccgttag-ttaacattgtctcctcttgtgctttacggttgtgtt------taaattgtaacgtgtgtttgattcag-----------------
||||| ||| |||||||||| || ||||||||||| ||||||||| | ||     |||  |||  |  || |       | || |||    |||||| |       ||    || || | | ||  | | |                  
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGgtatggtccactagactcgcagtagggtaacctgggctgattggttgtttcgccttctaggaggtgacatatcttcaaattatttttgtattactaggag

upper sequence: GLYMA01G43110.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G043737_T01 (Zea mays), 5'ss of exon 2
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgt--------------ccgttag-ttaacattgtctcctcttgtgctttacggttgtgtt------taaattgtaacgtgtgtttgattcag--------
||||| ||| |||||||||| || ||||||||||| ||||||||| | |||              ||  |||  |  || |       | || |||    |||||| |       ||    || ||  || ||  | | |         
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGgtatgtggttcttggtccactagactcgcagtagggtaacctgggctgattggttgtttcaccttctaggaggtgacaggtcttcaaattattttcgtat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213616992|gb|DB959304.1|DB959304
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|6913550|gb|AW395080.1|AW395080
EST:     GATCATTCCCGAGAAGAACCGTGAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTGTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: GATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|254319374|gb|GR828994.1|GR828994
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|9564108|gb|BE473617.1|BE473617
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|15664252|gb|BI701623.1|BI701623
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|15337796|gb|BI498452.1|BI498452
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298190635|gb|HO032756.1|HO032756
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCGAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298180140|gb|HO025355.1|HO025355
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|31455891|gb|CD397919.1|CD397919
EST:     AATACCTCTTCCAAG                         AGGGAGTCTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: AATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298185894|gb|HO031055.1|HO031055
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|5678095|gb|AI939225.1|AI939225
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298182546|gb|HO031281.1|HO031281
EST:     ATCATTCCCGAGAAGAGCCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|16282397|gb|BI944994.1|BI944994
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|15337913|gb|BI498569.1|BI498569
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298194501|gb|HO042973.1|HO042973
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|120533539|gb|EH261672.1|EH261672
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|57574072|gb|CX547047.1|CX547047
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|11413372|gb|BF425383.1|BF425383
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|10232613|gb|BE801501.1|BE801501
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|120491553|gb|EH219720.1|EH219720
EST:     TAAAGAGATCTGCAAATACNTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: TAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298164731|gb|HO014376.1|HO014376
EST:     ATCACTCCCGAGAAGGACCGTAAAGAGATCTGCAAATACCTCCTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|6747397|gb|AW317853.1|AW317853
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|7588738|gb|AW704527.1|AW704527
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298169501|gb|HO020861.1|HO020861
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|12773427|gb|BG238354.1|BG238354
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|9203940|gb|BE330164.1|BE330164
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|209717818|gb|BW668955.1|BW668955
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|7686154|gb|AW756802.1|AW756802
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|254331988|gb|GR843731.1|GR843731
EST:     CCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: CCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|120491512|gb|EH219679.1|EH219679
EST:     TAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: TAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|209726056|gb|BW672782.1|BW672782
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|8826147|gb|BE209807.1|BE209807
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298198993|gb|HO042356.1|HO042356
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|254331105|gb|GR843224.1|GR843224
EST:     ATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298171773|gb|HO021365.1|HO021365
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATA-CTCCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAG
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCT-CTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAG
EST: gi|20076025|gb|BQ094817.1|BQ094817
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298166243|gb|HO009214.1|HO009214
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298190372|gb|HO032493.1|HO032493
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|151406216|gb|EV276031.1|EV276031
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|13480953|gb|BG510296.1|BG510296
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298190768|gb|HO032889.1|HO032889
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|10844174|gb|BF067501.1|BF067501
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|254331104|gb|GR843223.1|GR843223
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298181186|gb|HO022625.1|HO022625
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|15338208|gb|BI498872.1|BI498872
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|58024826|gb|CX711567.1|CX711567
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|13791000|gb|BG653591.1|BG653591
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|5678129|gb|AI939259.1|AI939259
EST:     CATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: CATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|31459148|gb|CD401176.1|CD401176
EST:     GAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: GAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|120491731|gb|EH219898.1|EH219898
EST:     CATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: CATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|31469124|gb|CD411152.1|CD411152
EST:     GATCATTCCCGAGAAGAACCGTAAAGAGATCGGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: GATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|19934572|gb|BQ079602.1|BQ079602
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298178099|gb|HO027482.1|HO027482
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|16996278|gb|BM085650.1|BM085650
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|20207763|gb|BQ133852.1|BQ133852
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|209707030|gb|BW653193.1|BW653193
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|15664288|gb|BI701659.1|BI701659
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|57575700|gb|CX548675.1|CX548675
EST:     GCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: GCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298168274|gb|HO014449.1|HO014449
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|12772030|gb|BG236957.1|BG236957
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|120491785|gb|EH219952.1|EH219952
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298183488|gb|HO028701.1|HO028701
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|9440144|gb|BE440654.1|BE440654
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|20075717|gb|BQ094500.1|BQ094500
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|120491531|gb|EH219698.1|EH219698
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298172140|gb|HO021732.1|HO021732
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|120491350|gb|EH219517.1|EH219517
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|26269501|gb|CA820564.1|CA820564
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|19934573|gb|BQ079603.1|BQ079603
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|46492771|gb|CN472327.1|CN472327
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|20812031|gb|BQ296509.1|BQ296509
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|15814698|gb|BI786973.1|BI786973
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
EST: gi|298184621|gb|HO029834.1|HO029834
EST:     ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAG                         AGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA
genomic: ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt ... tttgattcagAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagttaacattgtctcctcttgtgctttacggttgtgtttaaattgtaacgtgtgtttgattcag

- - - - - - AAGAAC
- - - - - - - - - - - AAGAGA
- - - - - - - - - - - - GAGATC