1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGGATCCTGTTCTTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGgtactcttatctatttcccttctcaattgctattcattgtggttttagatatttaatcaattcgcttgattcattccccttatcaatacttgtttgtgctgcattcatgttatgaagggttttctcctttcag
species | Glycine max |
transcript | GLYMA01G42920.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAG GACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGEST: gi|193419497|gb|FK383609.1|FK383609
genomic: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGgtactcttat ... ctcctttcagGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGG
EST: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAG GACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTTEST: gi|193322968|gb|FK292032.1|FK292032
genomic: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGgtactcttat ... ctcctttcagGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTT
EST: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAG GACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTTEST: gi|298197840|gb|HO039379.1|HO039379
genomic: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGgtactcttat ... ctcctttcagGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTT
EST: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAG GACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTTEST: gi|193380598|gb|FK349228.1|FK349228
genomic: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGgtactcttat ... ctcctttcagGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTT
EST: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAG GACATTACGCAGTCTATCAGTGGCAAACGTGAAAGTGACGGGGCAAGTGGTEST: gi|207754982|gb|GD727393.1|GD727393
genomic: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGgtactcttat ... ctcctttcagGACATTACGCAGTCTATCAGTGGCAA-CGTGAAAGTGACGGGGCA-GTGGT
EST: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAG GACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTTEST: gi|193319741|gb|FK283526.1|FK283526
genomic: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGgtactcttat ... ctcctttcagGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTT
EST: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAG GACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAAGTGGTT
genomic: TTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGgtactcttat ... ctcctttcagGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCA-GTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGATCCTGTTCTTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGgtactcttatctatttcccttctcaattgctattcattgtggttttagatatttaatcaattcgcttgattcattccccttatcaatacttgtttgtgctgcattcatgttatgaagggttttctcctttcag
- - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - AGAAGC