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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatttgtttttctttctcacaatcttattgttaccgaatactaatttactagcattcatttctttttcaaattactgtgtactttgtgagttgt...

Basic information

species Glycine max
transcript GLYMA01G41620.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41620.2 (Glycine max), 5'ss of exon 2
lower sequence: AT4G16720.1 (Arabidopsis thaliana), 5'ss of exon 2
GGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatttgtttttctttctcacaatcttattgttaccgaatactaatt--tactagcattcatttctttttcaaattactgtgtactttgtgagttgt------
||| |||||||||||||| || ||||||||||| ||||||||| |    ||| |||| || ||||| ||||||||||| ||||| | |||||| |||||||| |         | ||    | |  ||| | | | ||| |  ||  |  ||  || | |   ||| | || ||      ||   ||   |||||      |      
GGTTAGGTGCTGGGAGTACAGACAGCAACCTTCGATTGTTCGTCTCGTCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTTGGGTTACAAGGCCAAGCAGgtga--------ctctttaaaccctaaatttgagttttagctgattttgtttcatattggtgatcactgctgttcagctgtataatgagttttgtagacgttgattgt

upper sequence: GLYMA01G41620.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 5'ss of exon 2
GGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatttgtttttctttctcacaatcttattgttaccgaatactaatttactagcattcatttctttttca-aattactgtgtactttgtgagttgt---
||| ||||| ||||||||  | || || || |||||||||||| | ||| || |||| || ||||||||||||||  | ||||||| ||||||||||||||| ||||| | ||| |    |  ||     | |    |  |  | | |  ||||     | |  | |  ||   | || |  |||  |||   | |  ||    
GGTTAGGTGTTGGGAGTACCGTCAACATCCGTCCATTGTTCGTGTTACACGGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgt-aacaagtggttgtatagttgcaatgcttcagcactttcaga-attgctttat--atactagtatgattgagagaactggtgtccactgatttatatggcac

upper sequence: GLYMA01G41620.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ36722 (Selaginella moellendorffii), 5'ss of exon 2
GGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatttgtttttctttctcacaatcttattgttaccgaatactaatttactagcattcatttctttttcaaattactgtgtactttgtgagttgt
 ||  | |||||||||||| | ||||  ||    || || ||| |     |  | || ||||||||||||||||||||| |||| |||||||| |||||||| |  ||||| |  ||  |||       ||   | ||         | ||    | |   ||   || |                              
CGTCCGCTGCTGGGAGTATCGCCAGCTCCCCGGAATCGTCCGTATCCAGCGCCCGACGCGCCCTGACAAGGCTCGTCGCCTGGGATTCAAGGCCAAGCAGgtaa--aatttctcctttcttcgtgtgtgctagctctt---------tgatcgtttcgtgctcgaatcctcacag-------------------------

upper sequence: GLYMA01G41620.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ27946 (Selaginella moellendorffii), 5'ss of exon 2
GGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatttgtttttctttctcacaatcttattgttaccgaatactaatttactagcattcatttctttttcaaattactgtgtactttgtgagttgt
 ||  | |||||||||||| | ||||  ||    || || ||| |     |  | || ||||||||||| ||||||||| |||| |||||||| |||||||| |  ||||| |  ||  |||       ||   | ||         | ||    | |   ||   || |                              
CGTCCGCTGCTGGGAGTATCGCCAGCTCCCCGGAATCGTCCGTATTCAGCGCCCGACTCGCCCTGACAAAGCTCGTCGCCTGGGATTCAAGGCCAAGCAGgtaa--aatttctcctttcttcgtgtgtgctagctctt---------tgatcgtttcgtgctcgaatcctcacag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827482|gb|BE211212.1|BE211212
EST:     GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAG                         GGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
genomic: GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatt ... gacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
EST: gi|15287650|gb|BI471541.1|BI471541
EST:     GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAG                         GGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
genomic: GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatt ... gacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
EST: gi|12689256|gb|BG155592.1|BG155592
EST:     GGTCGACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAG                         GGCTATGTGATATACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGGCCA
genomic: GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatt ... gacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
EST: gi|23729345|gb|BU762755.1|BU762755
EST:     GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGTTAAGCAG                         GGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
genomic: GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatt ... gacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
EST: gi|7796785|gb|AW782179.1|AW782179
EST:     GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAG                         GGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
genomic: GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatt ... gacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
EST: gi|31561369|gb|CD487207.1|CD487207
EST:     GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAG                         GGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
genomic: GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatt ... gacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
EST: gi|207810578|gb|GD781687.1|GD781687
EST:     GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAG                         GGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGT
genomic: GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatt ... gacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGT
EST: gi|14258879|gb|BG881787.1|BG881787
EST:     GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAG                         GGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA
genomic: GGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGgttaacaatt ... gacaatgcagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCA