1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAATTGGGGATCAGTGCTCTAATCGTGGAGTGAAAAAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGTgtatgttggcataacttttatattaatttccttagcatgtataaaaaaattattttccattgttttccttttccctagcatttgttagcattttatcctctgaaagtagaggctgcaatgttgttttcatggctaataaagtttccctatttcttcag
species | Glycine max |
transcript | GLYMA01G41570.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGT CGAGGTTGGAAATGGATCATGGGATTCATGGEST: gi|298163157|gb|HO011890.1|HO011890
genomic: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGTgtatgttggc ... atttcttcagCGAGGTTGGAAATGGATCATGGGATTCATGG
EST: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGT CGAGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAEST: gi|24136207|gb|BU926717.1|BU926717
genomic: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGTgtatgttggc ... atttcttcagCGAGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCA
EST: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGT CGAGGTTGGAAATGGATCATGGTACTCATGGTTTGAGCCTTTGAAAGAGCAEST: gi|207751210|gb|GD726213.1|GD726213
genomic: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGTgtatgttggc ... atttcttcagCGAGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCA
EST: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGT CGAGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAEST: gi|213613400|gb|DB956914.1|DB956914
genomic: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGTgtatgttggc ... atttcttcagCGAGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCA
EST: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGT CGAGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAEST: gi|21285430|gb|BQ473301.1|BQ473301
genomic: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGTgtatgttggc ... atttcttcagCGAGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCA
EST: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGT CGAGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCAEST: gi|6071031|gb|AW100418.1|AW100418
genomic: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGTgtatgttggc ... atttcttcagCGAGGTTGGAAATGGATCATGGGATTCATGGTTTGAGCCTTTGAAAGAGCA
EST: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGT CGAGGTTGGAAATGGATCATGGGATTTCATGGTTTTGACCCTTTGAAAGAG
genomic: AAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGTgtatgttggc ... atttcttcagCGAGGTTGGAAATGGATCATGGGATT-CATGGTTT-GAGCCTTTGAAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTGGGGATCAGTGCTCTAATCGTGGAGTGAAAAAATTCACACAGCAATTGAGCAGCTTCTCTGGTGCTGAAGGATATTGTGTgtatgttggcataacttttatattaatttccttagcatgtataaaaaaattattttccattgttttccttttccctagcatttgttagcattttatcctctgaaagtagaggctgcaatgttgttttcatggctaataaagtttccctatttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG