1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatgggaccagcatctcatagtaatagtataaattataaaatggtcaggaaatgaaaagggttttaggaaaggattggaagaagtaggatcatg...
species | Glycine max |
transcript | GLYMA01G41100.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAAGATCGAACTGTCCGACTGCAG-TGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|254315767|gb|GR825576.1|GR825576
genomic: TGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|207803954|gb|GD774019.1|GD774019
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCAGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|208286428|gb|GE086514.1|GE086514
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGEST: gi|254345172|gb|GR851548.1|GR851548
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAG
EST: CAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|193541374|gb|FK499126.1|FK499126
genomic: CAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|254322229|gb|GR837643.1|GR837643
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|254348134|gb|GR851813.1|GR851813
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|192322517|gb|FK014638.1|FK014638
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|208278904|gb|GE078795.1|GE078795
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: ACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|208296568|gb|GE089696.1|GE089696
genomic: ACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGEST: gi|254319917|gb|GR830941.1|GR830941
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|193617486|gb|FK568852.1|FK568852
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|193446278|gb|FK413075.1|FK413075
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: TTCGACTGCAGCTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|254345173|gb|GR851549.1|GR851549
genomic: TTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: GAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGEST: gi|193381439|gb|FK347492.1|FK347492
genomic: GAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAG
EST: CTATCAAAAACTATGTATCTCGAAGATCGAACTGTTCGACTGCAGTTGTG GGATACAGCTGGCCAGGAAAGATTTAGAAGTCTTATT
genomic: CTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatg ... gttatgacagGGATACAGCTGGGCAGGAAAGATTTAGAAGTCTTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGgtaagatatgggaccagcatctcatagtaatagtataaattataaaatggtcaggaaatgaaaagggttttaggaaaggattggaagaagtaggatcatg
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaaa