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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTATATTGTGATTGTTGTCAGTAGCAATGCTAATGTTGCTTGTGCTTTCAAGTTTGTTGTTGAGgtattcaacctcttgctgtcactgccacttatctgatgatgtctagcttggtcggttaaattatgtttcatcatgcaggctttagttttagttttatttt...

Basic information

species Glycine max
transcript GLYMA01G40700.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40700.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 2
TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTATATTGTGATTGTTGTCAGTAGCAATGCTAATGTTGCTTGTGCTTTCAAGTTTGTTGTTGAGgtattcaacctcttgctgtcactgccacttatctgatgatgtctagcttggtcggttaaattatgtttcatcatgcaggctttagttttagt-tttatttt--
 || |||||||||||||| ||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||||||||||||| |   | |||   |||   |       |||| ||    | |  ||  |||  |  || |  |    |   | ||| |   |   ||||| |||   ||  
AGGTTGCTCTTTCTTTTATATGAGAATCAGCAATGTGTACATTGTGATTGTGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtcatctccttgttttttt---gcatcttatcgaatttgactatgtccatataaatgagcaataagcttcagtcaacaaggttagtctttgaattgg

upper sequence: GLYMA01G40700.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S54_156V6.1 (Physcomitrella patens), 5'ss of exon 2
TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTATATTGTGATTGTTGTCAGTAGCAATGCTAATGTTGCTTGTGCTTTCAAGTTTGTTGTTGAGgtattcaacctcttgctgtcactgccactta-tctgatgatgtctagcttggtcggttaaattatgtttcatcatgcaggcttta----gttttagttttatttt
 ||||||||||| || |||||| | ||||||||||| || || || | |||||| || |||||||| ||||  ||||| || ||||| || || ||||||||||        | ||      |  |||    | | ||    || | |||| ||   |   ||| | | |    ||||   || |    |    |||||  ||| 
AGGCTGCTCTTTTTTGTACATGCGCATCAGCAATGTGTACATAGTCACTGTTGTTAGCAGCAATGCCAATGCAGCTTGCGCCTTCAAATTCGTGGTTGAGgtatgtc-ttattagcaagtcttctcacaagctttcattggatccaacttgatccagt--gtta-gatccggactgcaattttcacgaagccagagtttcgttt-

upper sequence: GLYMA01G40700.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ22278 (Selaginella moellendorffii), 5'ss of exon 2
TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTATATTGTGATTGTTGTCAGTAGCAATGCTAATGTTGCTTGTGCTTTCAAGTTTGTTGTTGAGgtattcaacctcttgctgtcactgccacttatctgatgatgtctagcttggtcggttaaattatgtttcatcatgcaggctttagttttagttttatttt
||| ||||| ||| | |||||| ||||||||||||| || |||||||| || ||||| |||||||| |||| ||| |||||| |||| |||||||| ||||| | ||  || |    |    ||   ||  | |  | |    | |||   |    |   |  | |||||                              
TGGATGCTCCTTCCTCTACATGCGGATCAGCAATGTCTACATTGTGATCGTCGTCAGCAGCAATGCCAATGCTGCCTGTGCTCTCAAATTTGTTGTGGAGgtctaca--ctttcagagattttgtttctcttgttcttaaactttgctccttt--ctcgttggtttttcacag---------------------------

upper sequence: GLYMA01G40700.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ25669 (Selaginella moellendorffii), 5'ss of exon 2
TGGCTGCTCTTTCTTTTACATGAGGATCAGCAATGTTTATATTGTGATTGTTGTCAGTAGCAATGCTAATGTTGCTTGTGCTTTCAAGTTTGTTGTTGAGgtattcaacctcttgctgtcactgccacttatctgatgatgtctagcttggtcggttaaattatgtttcatcatgcaggctttagttttagttttatttt
||| ||||| ||| | |||||| ||||||||||||| || |||||||| || ||||| |||||||| |||| ||| |||||| |||| ||||| || ||||| | |   || |    |    ||   ||  | |  | |    | |||   |    |   |  | |||||                              
TGGATGCTCCTTCCTCTACATGCGGATCAGCAATGTCTACATTGTGATCGTCGTCAGCAGCAATGCCAATGCTGCCTGTGCTCTCAAATTTGTCGTGGAGgtctacg--ctttcagagattttgtttctcttgttcttaaactttgctccttt--ctcgttggtttttcacag---------------------------