1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATTGACTCTCTGGGTGGTTTCCATCTATCGTTAGATGCCATTTTGGAAGGGCTTGGATATGCAGCTCCTCCAATTATGGCACTTTTGTTTATACTCGATgtaagttcatttattcattttatttgtgcttcaacttttttgaaaccccatgattgttggggaaaaaatgtataaagggggaaaatttgtgatttttctttgttcaattgagttgagccttagtcaaaataaactctcctcttttgtaaagcttctaattaatgagccggcatggtaattaatag
species | Glycine max |
transcript | GLYMA01G40650.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCTTGGATATGCAGCTCCTCCAATTATGGCACTTTTGTTTATACTCGAT GATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGATGTAGAGEST: gi|7693502|gb|AW761594.1|AW761594
genomic: GGCTTGGATATGCAGCTCCTCCAATTATGGCACTTTTGTTTATACTCGATgtaagttcat ... taattaatagGATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGATGTAGAG
EST: GGCTTGGATATGCAGCTCCTCCAATTATGGCACTTTTGTTTATACTCGAT GATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGATGTAGAGEST: gi|20813512|gb|BQ297990.1|BQ297990
genomic: GGCTTGGATATGCAGCTCCTCCAATTATGGCACTTTTGTTTATACTCGATgtaagttcat ... taattaatagGATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGATGTAGAG
EST: GGCTTGGATATGCAGCTCCTCCAATTATGGCACTTTTGTTTATACTCGAT GATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGATGTAGAGEST: gi|20811609|gb|BQ296087.1|BQ296087
genomic: GGCTTGGATATGCAGCTCCTCCAATTATGGCACTTTTGTTTATACTCGATgtaagttcat ... taattaatagGATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGATGTAGAG
EST: GGCTTGGATATGCAGCTCCTCCAATTATGTCACTTTTGTTTATACTCGAT GATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGAT
genomic: GGCTTGGATATGCAGCTCCTCCAATTATGGCACTTTTGTTTATACTCGATgtaagttcat ... taattaatagGATGAAGTTGTGAAGCTATCACCCCATGCCCGTGCCATCAGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGACTCTCTGGGTGGTTTCCATCTATCGTTAGATGCCATTTTGGAAGGGCTTGGATATGCAGCTCCTCCAATTATGGCACTTTTGTTTATACTCGATgtaagttcatttattcattttatttgtgcttcaacttttttgaaaccccatgattgttggggaaaaaatgtataaagggggaaaatttgtgatttttctttgttcaattgagttgagccttagtcaaaataaactctcctcttttgtaaagcttctaattaatgagccggcatggtaattaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC