Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCTTTTCTACTGGGTGGTTCTATTCACACTTACAATGAGGAGACAAATATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaatatatttttttccattcacaatgttgtgacaaatgttggttattaattcattaatggtgtttttatcaggattacatccttgttgctaatagtaagcttaaattttctgttttacttttag

Basic information

species Glycine max
transcript GLYMA01G39640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39640.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g00030.t01 (Vitis vinifera), 5'ss of exon 2
ACTCCTTTTCTACTGGGTGGTTCTATTCACACTTACAATGAGGAGACAAATATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaatatatttttttccattcacaatgttgtgacaaatgttggttattaattcattaatggtgtttttatcaggattacatccttgttgctaatagtaagcttaaattttctgttttacttttag
|||||||||||||||| |||| || ||||| || || ||||||||||| |||   ||||||||||||||||||||||| || ||||| ||||| |||| ||||    |  ||||   || |  |||   ||  ||||||  |   |   || |       ||  |    || ||||  |||| | ||||||  |  |   | |||  | |   ||||| |||     ||||
ACTCCTTTTCTACTGGATGGTACTGTTCACTCTCACCATGAGGAGACAGATAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgta----tcctataaccttcttaattt-taaacttgtgatgatcatattttgtgctgcttttgct--ctttgttattgggatcatatccttagtttttgaactaaattca---tttctatttc----ttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204256|gb|BE330480.1|BE330480
EST:     TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTG                         CGCTATGATGGAAAGAAAGCAGCA
genomic: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaa ... ttacttttagCGCTATGATGGAAAGAGAGCAGCA
EST: gi|9899526|gb|BE608494.1|BE608494
EST:     TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTG                         GGCTATGATGGAAAGAGAGCAGCATAAGGGCCCAAGCCCGAC
genomic: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaa ... ttacttttagCGCTATGATGGAAAGAGAGCAGCAGAAGG-CACAAGCCCGAC
EST: gi|20813178|gb|BQ297656.1|BQ297656
EST:     TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTG                         CGCTATGATGGAAAG
genomic: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaa ... ttacttttagCGCTATGATGGAAAG
EST: gi|6134085|gb|AW132414.1|AW132414
EST:     TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTG                         CGCTATGATGGAAAGAGAGCAGCAGAAGGCACA
genomic: TATCACACATGATCAAATACAAATATGTACCATTCTCATTTGGGAAACTGgtaggtttaa ... ttacttttagCGCTATGATGGAAAGAGAGCAGCAGAAGGCACA