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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcatgattaattatgtaccaacattgagtaaaatgacaccggcttagtcaattatttttttatgaaaccattaattatcacattcagacacacatatataaatatatgatgatgatgatgtaaaacag

Basic information

species Glycine max
transcript GLYMA01G39460.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329697|gb|FK022949.1|FK022949
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|213590575|gb|DB973320.1|DB973320
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|7587911|gb|AW703717.1|AW703717
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|37995278|gb|CF806867.1|CF806867
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|254344201|gb|GR855286.1|GR855286
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|192319030|gb|FK006870.1|FK006870
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|192302884|gb|FG998566.1|FG998566
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|192329604|gb|FK022240.1|FK022240
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|254341478|gb|GR850691.1|GR850691
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|192319031|gb|FK006871.1|FK006871
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|254336450|gb|GR842629.1|GR842629
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|192312912|gb|FK004054.1|FK004054
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|254334127|gb|GR849045.1|GR849045
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|7591460|gb|AW707192.1|AW707192
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|192312913|gb|FK004055.1|FK004055
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|298174983|gb|HO017978.1|HO017978
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|254317284|gb|GR826229.1|GR826229
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|192299316|gb|FG990741.1|FG990741
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|209697719|gb|BW655620.1|BW655620
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|192294842|gb|FG987531.1|FG987531
EST:     GAGCATGAGAGCTTGAAGGAACTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|37996206|gb|CF807795.1|CF807795
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|13252345|gb|BG363248.1|BG363248
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|254317493|gb|GR826477.1|GR826477
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
EST: gi|192298656|gb|FG988567.1|FG988567
EST:     GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTG                         GAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT
genomic: GAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcat ... tgtaaaacagGAACCTGATGGCTACACCACCTGACGAAGGACAACTTCTAGGCATGCTCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATATACTTGAAACCAGTGTGTACCCAAGAGAGCATGAGAGCTTGAAGGAGCTACGAGAGTTGACGGAAAAACACCCTTGgtaagatcatgattaattatgtaccaacattgagtaaaatgacaccggcttagtcaattatttttttatgaaaccattaattatcacattcagacacacatatataaatatatgatgatgatgatgtaaaacag

- - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - -  GGAGCT