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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGATCGACATGACCATGCCAATGCAGCCTCTCCGGCGCCCTATCACCGCCGATTCCGCGCTCATGAACCCTAACACCAGAATTCTCGCGCTTAAAGgtaaccaaccattcgcgccttcgattgattgcgttatatgattccaattcgatcacccaatgttttgttttgttttgtttcttctccgtgcag

Basic information

species Glycine max
transcript GLYMA01G38580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 2
GTCATGATCGACATGACCATGCCAATGCAGCCTCTCCGGCGCCCTATCACCGCCGATTCCGCGCTCATGAACCCTAACACCAGAATTCTCGCGCTTAAAGgtaaccaaccattcgcgcct-tcgattgattgcgttatatgattccaattcgatcacccaatgttttgttttgtt-ttgtttcttctccgtgcag------
|||||  |||||||| |||||||   |||||| |||||  | || ||||||||||| ||||| ||||||||||| |||||| | || ||||| || ||||||  |   | |       ||  |   |   | |  | |  |||    | |  ||  || |  | | |  | |  |  |   |  |||   | |        
GTCATCGTCGACATGGCCATGCCCGCGCAGCCCCTCCGCAGGCCCATCACCGCCGACTCCGCCCTCATGAACCCCAACACCCGCATCCTCGCCCTCAAAGgttccttcctacctagatctacctgctatctactctttcggatcttcactt-atttcctagcgatctactctcctactccctaatctttctactatttgct

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 2
GTCATGATCGACATGACCATGCCAATGCAGCCTCTCCGGCGCCCTATCACCGCCGATTCCGCGCTCATGAACCCTAACACCAGAATTCTCGCGCTTAAAGgtaaccaaccattcgcgcct-tcgattgattgcgttatatgattccaatt------cgatcacccaatgttttgttttgttttgtttcttctccgtgcag
|||||  |||||||| |||||||   |||||| |||||  | || ||||||||||| ||||| ||||||||||| |||||| | || ||||| || ||||||  |   | |       ||  |   |   | |  | | ||||  || ||           | | | | || |  |   |  | ||||  ||   |||  
GTCATCGTCGACATGGCCATGCCCGCGCAGCCCCTCCGCAGGCCCATCACCGCCGACTCCGCCCTCATGAACCCCAACACCCGCATCCTCGCCCTCAAAGgttccttcctacctagatctacctgctatctactctttctgatctcacttatttcctagcgatctactcttctactccctaatatttccactatttgctt

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 2
GTCATGATCGACATGACCATGCCAATGCAGCCTCTCCGGCGCCCTATCACCGCCGATTCCGCGCTCATGAACCCTAACACCAGAATTCTCGCGCTTAAAGgtaaccaaccattcgcgccttcgattgattgcgttatatgattccaattcgatca-cccaatgttttgttttgttttgtttcttctccgtgcag------
||||| ||||||||| ||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||||||  || |||| || |||||||| ||||||    |     |  | |   | |  |   ||      |   ||||   |  ||    || |    ||    |  |    |  ||  | |||        
GTCATCATCGACATGGCCATGCCTATGCAGCCGCTCCGCCGCCCTATCACCGCCGACTCCGCCCTCATGAACCCCGACGCCAGGATCCTCGCGCTCAAAGgttcggacttgctgcctctacccaccgcccgcagcccctagatccagcccattcggttcactccactgcgcgggatctcattctcatcatgccctaccta