Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaag

Basic information

species Glycine max
transcript GLYMA01G38290.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38290.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G50700.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaag
| || |||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||   |||||||||||| |||||||| ||| |||| || ||||   |    |||| ||||  ||    | |||    |  || |  |||  ||||      |||     || |  | |||  |  | ||||||||                       
AATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGgt--aaagtgtttgccttt--tttgatcatac---ataagaaaaaatt--caaa------attcaacaatctaagttttgagtgatttttgtttgcag-------------------

upper sequence: GLYMA01G38290.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G66730.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagttt-ctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaag
| || |||||||| || || |||||||| |||||||| ||||| || |||||||| || |||   |||||||||||||||||||| ||| |||| || ||||     |   |||  ||  |  ||   | |    || ||||  |  | |   | ||| |||  | | |  ||||| ||| |   ||                               
AATGTTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCATTCGAAGATTTGTGGCACCAAGGAGTATAAATGCGATTGTGGAACTCTGTTTTCTAGgtggcgacaaattg--ttataaacatattcaaaggtt-tgatctttcttatggattttactaacttgtggattgggttttgttgcag-------------------------------

upper sequence: GLYMA01G38290.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g12220.t01 (Vitis vinifera), 5'ss of exon 2
AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaag
 |||||| ||||| ||||| || || || ||||||||||| || |  || | |||||||||| |||| || ||||||||||| || |||||||| |||||||| |   || | |  | |   |   | || || |||    | ||  |     || | ||  |        ||||   |   ||||   ||      |||                 
GGTGCTCCAAGAAGTACGCCGTGCAGTCAGATTGGAAGGCGCATTTGAAAACTTGCGGTACCAGAGAATACAAATGCGATTGCGGAACTTTGTTTTCGAGgttct---ctatcgtttctttcttctcatttccttttacacttcttctccgctaggt-ctgctgataatcctgggaaattaaaaagaaatggaaaagtttacaa-------------

upper sequence: GLYMA01G38290.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S43_228V6.1 (Physcomitrella patens), 5'ss of exon 2
AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggat-ttggggtttatgaaagttttgttttgtttttttgtttttttctgaag
|||||||||||| |||||| ||||||||||| |||||||| ||||| |||| ||| ||||| ||||||||    ||||||||||| ||  | ||||| ||||     |||    | || ||||     | |    |  |   ||   ||| |||| ||  |   |  | |  || |||| || || ||   | ||                       
AGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACTTGTGGTACTCGAGAGTACCGCTGCGATTGTGGTACCCTTTTCTCCAGgtaaggtcctgcatggtt-cattgcatttgatgaatatttgcac--gtgaaaaagatttgacaagaagctactgtggttcataaacgtggaggttaagaagcc---------------

upper sequence: GLYMA01G38290.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S63_51V6.1 (Physcomitrella patens), 5'ss of exon 2
AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttacccttttggctttcattcacccttaccctttgtgatactattg-acaaagtt-tctatttggggatttggggtttatgaaagttttgttttgtttttttgtttttttctgaag
|||||||||||| |||||| ||||||||||| |||||||| ||||| |||| ||| ||||| ||||||||    ||||||||||| || || || || ||||   |  || |||   ||| ||  |    |  |  ||     || ||| |||  ||| |  | ||||      |    ||  |||   ||      |    ||               
AGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACTTGTGGTACTCGAGAGTACCGCTGCGATTGTGGGACCTTATTTTCCAGgtgagattctcttgtggttcttttgc----atacgatggacatctcttgcacagggttgtgaagttggcagaccgtacgttgcgaagacttccggaagcacctt---------------

upper sequence: GLYMA01G38290.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S165_3V6.1 (Physcomitrella patens), 5'ss of exon 3
AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggggtttatgaaagttttgttttgttttt-ttgtttttttctgaag
|||||||||||| |||||| ||||||||||| |||||||| ||||| ||||  || ||||| ||||||||    ||||||||||| || || || || ||||     |||| |  ||||  | |  |     ||   |  |||   |  ||||  |    |  |      ||    |||| |  ||||  || | |       ||             
AGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACGTGTGGTACTCGAGAGTACCGCTGCGATTGTGGTACCTTATTTTCCAGgtcagttccttct--ctttggtccttcgcagtccaagggtatatcttacacaagatcgtaaggtaaaccatt----tttaggtcagttgcgtctcgcggaagctgc------------

upper sequence: GLYMA01G38290.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S125_69V6.1 (Physcomitrella patens), 5'ss of exon 2
AGTGCTCTAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgt---tttacccttttggctttcattcacccttaccctttgtgatactattgacaaagtttctatttggggatttggg-gtttatgaaagttttgttttgtttttttgtttttttctgaag
|||||||||||| |||||| ||||||||||| |||||||| ||||| |||| ||| ||||| ||||||||    ||||||||||| || || || || ||||   |||  |||  | | ||   ||| ||   |    |  |  | | | |||||   |    |         | ||| | || ||  |  |  |    |                     
AGTGCTCTAAGAGATACGCTGTTCAATCCGACTGGAAGGCCCACTCTAAGACTTGTGGTACTCGAGAGTACCGCTGCGATTGTGGTACCTTATTTTCCAGgtcagtttctcctccttggttcttttc-cctagatgggtgtttcttccactgacacgatgagcagccaattcatagggtgcttgtgtcaactccgggaagc--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13251965|gb|BG362868.1|BG362868
EST:     ATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAG                         GAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGA
genomic: ATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGgttttaccct ... ttttctgaagGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTAGCAGAGGA