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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGGGTAGGCCTACCATGGATTGGCCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACTgtaagagtcgcatccgtctagtttatgatttttccttttcttctctgtttatatatttatttttttatttttgctgtattctctcatgtacactttag

Basic information

species Glycine max
transcript GLYMA01G38110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38110.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 5'ss of exon 3
GAAAGGGTAGGCCTACCATGGATTGGCCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACTgtaagag--tcgcatccgtctagtttatgatttttccttttcttctctgtttatatatttatttttttatttt-tgctgtattctctcatgtacactttag
     ||| | || | |||||||||| ||| ||| ||||| |||||| | ||||| || |||||||||||||| |||||||| ||||||||||   ||||||||  ||         ||| | ||  |||||||| | |  ||||| |||| || |     ||| |                      
----TGGTCGACCGATCATGGATTGGGCAAGTAGGATGCGTATTGCATTGGGATCGGCCAAAGGGCTTGCTTACCTTCATGAAGACTgtaagaaactcgcatcc-cctgtccccccttttcttctcctcttctctctct-catattcatttgttaaacgcatgcag----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213596209|gb|DB960194.1|DB960194
EST:     GCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACT                         GTCATCCTCGTATTATCCATCGCGATATCAAAGCTGCAAATGTCCTTATTG
genomic: GCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACTgtaagagtcg ... tacactttagGTCATCCTCGTATTATCCATCGCGATATCAAAGCTGCAAATGTCCTTATTG