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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagattcttctaattcccctctcaatcaacaccctaaatattctcgatttccttcttccattgttccctttacattgttttttgttcctttgctttgtttctctctggaag

Basic information

species Glycine max
transcript GLYMA01G37480.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37480.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 5'ss of exon 2
TGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagattcttctaattcccctctcaatcaacaccctaaatattctcgatttccttcttccattgttccctttacatt--gttttttgttcctttgctttgtttctctctggaag
|||| ||||| || |||||  |||| ||||| ||||||| ||||||||||||||| || ||  | || ||||||||||| ||||||||||||||||||||||    ||  |  |     |||  | |    | ||| | |||    | || |||   || |    ||   | ||  | ||  || | ||   | || | ||    |      |    
TGAGCAAGATCGCGTGCAACCGGCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCTCCCTCCGGCTTCAAGCACAAGGTCACCGACAATCTCCAGAGgt----gacccccc-----ccctcccccgcgaccactccaaacccacgcggtttttgtcct----tgccgctttcgcgtttcgtctctttccctttcgattcagatgaaatcg----

upper sequence: GLYMA01G37480.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G116840_T03 (Zea mays), 5'ss of exon 2
TGAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagattcttctaattcccctctcaatcaacaccctaaatattctcgatttccttcttccattgttccctttacattgttttttgttcctttgctttgtttctctctggaag
|||| ||||| |||||||   | || ||||| ||||||| ||||||||||||||| || ||  | || ||||||||||  ||||||||| | |||||||||| ||         |  |  ||||  | |||  |   |   |    |  |   ||| |  |     |   |  ||| |||  ||| |   || | |||  ||   |         
TGAGCAAGATCGCCTGCAGCCGCCTGCAGAAGGAGCTCGCGGAGTGGCAGGTCAACCCGCCCGCGGGCTTCAAGCACAGGGTCACCGACGACCTCCAGAGgtgcccctccgccatcgtcgcccttcctatcccctttcctcag---caggcaatccctgctgtgcggggtctcttagattcctttct---ccgtggctccgtgctt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209697785|gb|BW663924.1|BW663924
EST:     GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
genomic: GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
EST: gi|15664810|gb|BI702173.1|BI702173
EST:     GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
genomic: GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
EST: gi|10844680|gb|BF067906.1|BF067906
EST:     CACAAAGTCACCGACAATCTCCAGAG                         GTGGGTGGTCTGAAGTCANCTGGAGCTCCTGGGACACTTTACGCTAACGAG
genomic: CACAAAGTCACCGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGT-TGAAGTCA-CTGGAGCTCCTGGGACACTTTACGCTAACGAG
EST: gi|9204241|gb|BE330465.1|BE330465
EST:     GTCAATCCCCCCACTGGTTTCAAGCACAAAGTCACAGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAATGAGAC
genomic: GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
EST: gi|209703743|gb|BW656876.1|BW656876
EST:     GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
genomic: GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
EST: gi|20813177|gb|BQ297655.1|BQ297655
EST:     GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
genomic: GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
EST: gi|27445947|gb|CA953070.1|CA953070
EST:     GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
genomic: GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
EST: gi|37996938|gb|CF808527.1|CF808527
EST:     GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAG                         GTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC
genomic: GTCAATCCCCCAACTGGTTTCAAGCACAAAGTCACCGACAATCTCCAGAGgtaccagatt ... tctctggaagGTGGGTGGTTGAAGTCACTGGAGCTCCTGGGACACTTTACGCTAACGAGAC