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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctcccttctaaaaacataattttgggttctgggtaattgttctattccgcaatttatgaagaaattcagctgcatttgcatttca...

Basic information

species Glycine max
transcript GLYMA01G36880.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctcccttctaaaaacataattttgggttctgggtaattgttctattccgcaatttatgaagaaattcagctgcatttgcatttca
||||||||| || |||||||| ||||||||||| || ||||| || || || ||||| |||||  |||| || |||||||||  |||||| || ||||| ||  ||| |    |||| | |  |       |   |        |   |  |  |  | |||  |  | | |       |     |  | ||   ||| |
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACCGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACTgtgcgtattcttcttcttcttcttcttcttcttcctccaaacatttccttttcttcttcttcttctttcttttgcttcttctttttttaattatttttga

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G803949_T01 (Zea mays), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctcccttctaaaaacataattttgggttctgggta-attgttctattccgcaatttatgaagaaattcagctgcatttgcatttca----
||||||||| || |||||||| ||||||||||| || ||||| || || || ||||| |||||  |||| ||||||||||||  |||||| || ||||||||  |  | ||||     |||   |       ||||||   |||||||   | |   |   |    ||||   |  |   |   | |  || ||     |     
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATTTCCTACACCTCCAACACCTTCCCCACCgtacgcccctcct-----cctctgacggtttcaatttttttttctggggggagtccccggattttgaattgcggcggcggtcttgatcgatctggggcgcgctgg

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G846811_T01 (Zea mays), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctccct-----tctaaaaacataattttgggttctgggtaattgttctattccgcaatttatgaagaaattcagctgcatttgcatttca
||||||||| || |||||||| ||||||||||| || ||||| || || || ||||| |||||  |||| || |||||||||  |||||| || ||||||||  |  | | | | |||  |     ||           |||    || |        || |   ||||  ||||     ||| | |  | || ||     |   
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACCgtacgctccttcctcctcattgttgctccgctggagaggtttcatttttttttggggggtcccggtccgggatttt----gaattgcgacggcgttcttgatcg-

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: AT3G51300.1 (Arabidopsis thaliana), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgtta-gtact-----tcctttctcccttctaaaaacataattttgggttctgggtaattgttctattccgcaatttatgaagaaattcagctgcatttgcatttca
 ||||||||||| |||||| | |||||||| || ||||| ||||| ||||| || ||||| |||||| | ||||| ||||| ||||||||||| || || |||| || |      | |||||    ||||     ||| |         |    ||  |  | | |   |    || ||  || || |||                
AATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAACTTGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGgttatgtcccaattattctttcatgtttcttgtttcattaccacaacaacaacatatctcatgtttcttgtttcttttgtggatatacag----------------

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 2
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctcccttctaaaaacataattt------tgggttctgggt-----aattgttctattccgcaatttatgaag--aaattcagctgcatt-tgcatttca-------------------------------------------------------------------------------
 ||||||||||| |||||||| ||||| ||||| ||||| || || ||||| || |||||||||||||| ||||| |||||||||||||||||||| || ||      |||||| ||    |  ||  | ||  | |      ||  ||    |      ||||||  | |      ||| ||||    |||    |  ||| |       ||                                                                                
AATGAGCGCTTCGAGGTTCATAAAGTGTGTCACCGTTGGCGACGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTACACCAGCAACACTTTTCCTACGgtataatgttccttccttagattgaatcatattctgtgttctgtgaattacaagcttcaaaattgtcttctctattgattgatgagaccaaagcttgtggcaatacatgaatcgatccataatttttttttggtgttatgaggatttgtggagctttgtatctcattgaatcttgtaaattcatgtggaacag

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCAC------Cgttagtacttcctttctcccttctaaaaacataatt--ttgggttctgggtaattgttctatt--ccgcaatttatg------aagaaattcagctgcatttgcatttca----
 |||||||| || |||||||| ||||||||||| ||||| ||||| ||||| || |||||||||||||| ||||| || ||||||||||| ||||||||      | | | |  |||      |  || |  | |  | |||  || | |||||  |      | |||     |  ||  ||       || ||  |    | ||||| ||||  |    
AATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATGGAGCTGTTGGTAAAACCTGTTTGCTGATTTCTTATACCAGCAACACCTTTCCCACGgtattcatcaatcattctccctcctttttttgatatctgattcatttgattctgattgtgccatatatgaattgggatccatacatactaaaaatgttgtatacatttccattggaacag

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 2
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctcccttctaaaaacataattttgggttctgggtaatt----gttctattccgcaatttatgaagaaattcagctgcatttgcatttca
 ||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||||| ||| | ||||| ||||| |||||||||||||| ||||| || ||| | || |||| |   |||| |        ||||||  |  ||  |||    | | |||||| |     |||| |      |  |    | || ||   
AATGAGTGCTTCAAGGTTCATCAAGTGCGTCACTGTAGGGGATGGTGCCGTTGGCAAAACTTGTCTCCTTATCTCCTATACCAGCAACACTTTCCCCACGgtgagt-cctcatttcccatatctagagtttcctatttgggcccgtggagattaggggctttattcccctccggatgatgtggaagaaattttctggcttt---

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: PP1S51_114V6.1 (Physcomitrella patens), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctcccttctaaaaacataattttgggttctgggtaattgttctattccgcaatttatgaagaaat---tcagctgcatttgcatttca
 |||||| ||||  |||| ||||||||||| |||||||| ||||| ||||| || || || ||  |||||||||| |||||||||||||| ||||| || || || |    ||   |    |  |      ||   |  || |  | ||   | | |||     || |   |     |||   ||| |   | || |   || 
-ATGAGCACTTCACGGTTTATCAAGTGCGTGACTGTTGGAGATGGAGCTGTCGGGAAGACGTGCATGCTTATTTCATACACCAGCAACACATTTCCTACTgtaagcaacgactgcttg---tggagtggtctatcatctggataggtgttggtttcctaagtttcattcggttgctgaatccctcaacaagaattacggatct

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: PP1S257_74V6.1 (Physcomitrella patens), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctcccttctaaaaacataattt--tgggttctgggtaattgttctattccgcaatttatgaagaaattcagct-gcatttgcatttca
 |||||| ||||| | || ||||||||||| ||||| || ||||| |||||||| || || ||  |||||||||| || |||||||| || ||||| || || ||         |||||   ||   |  ||   |   | ||||   | |  || ||   ||||   | |    |     ||| | | |||  | |  ||  
CATGAGCACTTCTCGCTTTATCAAGTGCGTTACTGTAGGAGATGGAGCTGTGGGGAAGACGTGCATGCTTATTTCATATACCAGCAATACATTTCCTACTgtaagctgcgatagtctccgaactggcattatccctgaataggtttcagtt--ttcttagcttcccttactctgaacccttttcgggtcgcagatccgcttt-

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: EFJ04304 (Selaginella moellendorffii), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctcccttctaaaaacataattttgggttctgggtaattgttctattccgcaatttatgaagaaattcagctgcatttgcatttca
 |||||| |||| ||||| || || || |||||||| || ||||| || || |||||||| ||  |||| ||||| ||||| |||||||||||||| || || ||   ||   |||||  |    | |    |||| |         || | |||   |||||                                     
-ATGAGCACTTCCAGGTTTATTAAATGTGTCACTGTGGGAGATGGGGCCGTCGGCAAAACATGCATGCTAATTTCTTACACAAGCAACACTTTTCCTACTgtgagattttttcttctcttt----agatgggaattctaacc-----gtgaatgtctgattccag-----------------------------------

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: EFJ16760 (Selaginella moellendorffii), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtacttcctttctcccttctaaaaacataattttgggttctgggtaattgttctattccgcaatttatgaagaaattcagctgcatttgcatttca
||||||| |||| ||||| || || || |||||||| || ||||| || || |||||||| ||  |||| ||||| ||||| |||||||||||||| || || ||   ||   |||||  |    | |    |||| |         || | |||   |||||                                     
GATGAGCACTTCCAGGTTTATTAAATGTGTCACTGTGGGAGATGGGGCCGTCGGCAAAACATGCATGCTAATTTCTTACACAAGCAACACTTTTCCTACTgtgagattttttcttctcttt----agatgggaattctaacc-----gtgaatgtctgattccag-----------------------------------

upper sequence: GLYMA01G36880.4 (Glycine max), 5'ss of exon 1
lower sequence: EFJ09765 (Selaginella moellendorffii), 5'ss of exon 1
GATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttag----tacttcctttctcccttctaaaaacataattttgggttctgggtaattgttctattccgcaatttatgaagaaattcagctgcatttgcatttca
 |||||| |||| || || ||||||||||| || || || |||||||| |||||||| || ||  |||| ||||| ||||| ||||||||||| ||||| || ||       ||  ||  | |||| |      |   | |||||  |||||  || ||||   ||  ||                                  
CATGAGCACTTCAAGATTTATCAAGTGCGTTACCGTCGGAGATGGTGCGGTGGGCAAGACTTGCATGCTCATTTCATACACGAGCAACACTTTCCCCACTgtgagatttcgttttgttctttcctttttctctaactctcttggg--ctggg--atcgttc--atcaacag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13180797|gb|BG352137.1|BG352137
EST:     TGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACC                         GATTATGTGCCGACTGTTTTTGACAATTTCAGCGCAAATGTGGTTGTCAAT
genomic: TGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtactt ... ttaaaaacagGATTATGTGCCGACTGTTTTTGACAATTTCAGCGCAAATGTGGTTGTCAAT
EST: gi|12688223|gb|BG154559.1|BG154559
EST:     TGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCTCC                         GATGTATGTGACGACTGTTTTTGACGATTTAAGCGCAAATGTGGTTGTCAA
genomic: TGGGCAAAACCTGTTTGCTTATTTCCTACACCAGCAACACTTTTCCCACCgttagtactt ... ttaaaaacagGAT-TATGTGCCGACTGTTTTTGACAATTTCAGCGCAAATGTGGTTGTCAA